Publications by authors named "Matthew Loose"

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ROBIN: A unified nanopore-based assay integrating intraoperative methylome classification and next-day comprehensive profiling for ultra-rapid tumor diagnosis.
Simon Deacon, Inswasti Cahyani, Nadine Holmes, Graeme Fox, Rory Munro, Matthew Loose

Neuro Oncol· September 2025

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An optimized toolkit for high-molecular-weight DNA extraction and ultra-long-read nanopore sequencing using glass beads and hexamminecobalt(III) chloride.
Inswasti Cahyani, John Tyson, Nadine Holmes, Josh Quick, Chris Moore, Matthew Loose

Genome Res· May 2025

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Prospective, multicenter validation of a platform for rapid molecular profiling of central nervous system tumors.
Areeba Patel, Kirsten Göbel, Sebastian Ille, Felix Hinz, Natalie Schoebe, Matthew Loose

Nat Med· May 2025

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Enhancing nanopore adaptive sampling for PromethION using readfish at scale.
Rory Munro, Alexander Payne, Nadine Holmes, Chris Moore, Inswasti Cahyani, Matthew Loose

Genome Res· April 2025

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Programming of pluripotency and the germ line co-evolved from a Nanog ancestor.
Darren Crowley, Luke Simpson, Jodie Chatfield, Teri Forey, Cinzia Allegrucci, Matthew Loose

Cell Rep· March 2025

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A single-cell atlas of pig gastrulation as a resource for comparative embryology.
Luke Simpson, Andrew Strange, Doris Klisch, Sophie Kraunsoe, Takuya Azami, Matthew Loose

Nat Commun· June 2024

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Impact of whole-genome duplications on structural variant evolution in Cochlearia.
Tuomas Hämälä, Christopher Moore, Laura Cowan, Matthew Carlile, David Gopaulchan, Matthew Loose

Nat Commun· June 2024

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Icarust, a real-time simulator for Oxford Nanopore adaptive sampling.
Rory Munro, Satrio Wibowo, Alexander Payne, Matthew Loose

Bioinformatics· March 2024

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Lack of detection of SARS-CoV-2 in British wildlife 2020-21 and first description of a stoat () .
Ternenge Apaa, Amy J Withers, Laura Mackenzie, Ceri Staley, Nicola Dessi, Matthew Loose

J Gen Virol· December 2023

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Dynamic, adaptive sampling during nanopore sequencing using Bayesian experimental design.
Lukas Weilguny, Nicola De Maio, Rory Munro, Charlotte Manser, Ewan Birney, Matthew Loose

Nat Biotechnol· July 2023

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NANOG is required to establish the competence for germ-layer differentiation in the basal tetrapod axolotl.
Luke A Simpson, Darren Crowley, Teri Forey, Helena Acosta, Zoltan Ferjentsik, Matthew Loose

PLoS Biol· June 2023

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Sarbecoviruses of British horseshoe bats; sequence variation and epidemiology.
Ternenge Apaa, Amy J Withers, Ceri Staley, Adam Blanchard, Malcolm Bennett, Matthew Loose

J Gen Virol· June 2023

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Evaluation of variant calling algorithms for wastewater-based epidemiology using mixed populations of SARS-CoV-2 variants in synthetic and wastewater samples.
Irene Bassano, Vinoy K Ramachandran, Mohammad S Khalifa, Chris J Lilley, Mathew R Brown, Matthew Loose

Microb Genom· April 2023

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Dissecting microbial communities and resistomes for interconnected humans, soil, and livestock.
Alexandre Maciel-Guerra, Michelle Baker, Yue Hu, Wei Wang, Xibin Zhang, Matthew Loose

ISME J· January 2023

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Genome Reference Assembly for Bottlenecked Southern Australian Koalas.
Adam Mark Blanchard, Richard David Emes, Alex David Greenwood, Nadine Holmes, Matthew William Loose

Genome Biol Evol· January 2023

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Effectiveness of rapid SARS-CoV-2 genome sequencing in supporting infection control for hospital-onset COVID-19 infection: Multicentre, prospective study.
Oliver Stirrup, James Blackstone, Fiona Mapp, Alyson MacNeil, Monica Panca, Matthew Loose

Elife· September 2022

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Rapid-CNS: rapid comprehensive adaptive nanopore-sequencing of CNS tumors, a proof-of-concept study.
Areeba Patel, Helin Dogan, Alexander Payne, Elena Krause, Philipp Sievers, Matthew Loose

Acta Neuropathol· May 2022

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Genome Profiling of SARS-CoV-2 in Indonesia, ASEAN and the Neighbouring East Asian Countries: Features, Challenges and Achievements.
Inswasti Cahyani, Eko W Putro, Asep M Ridwanuloh, Satrio Wibowo, Hariyatun Hariyatun, Matthew Loose

Viruses· April 2022

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Genetic variation at mouse and human ribosomal DNA influences associated epigenetic states.
Francisco Rodriguez-Algarra, Robert A E Seaborne, Amy F Danson, Selin Yildizoglu, Harunori Yoshikawa, Matthew Loose

Genome Biol· February 2022

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The Impact of Real-Time Whole-Genome Sequencing in Controlling Healthcare-Associated SARS-CoV-2 Outbreaks.
Rodric V Francis, Harriet Billam, Mitch Clarke, Carl Yates, Theocharis Tsoleridis, Matthew Loose

J Infect Dis· January 2022

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minoTour, real-time monitoring and analysis for nanopore sequencers.
Rory Munro, Roberto Santos, Alexander Payne, Teri Forey, Solomon Osei, Matthew Loose

Bioinformatics· January 2022

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The UK Leicester COVID-19 'exceedance' May-July 2020: An analysis of hospitalised cases.
Julian W Tang, Paul W Bird, Christopher W Holmes, Daniela C Nicoara, Gerrit Woltmann, Matthew Loose

J Infect· July 2021

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Retrospective screening of routine respiratory samples revealed undetected community transmission and missed intervention opportunities for SARS-CoV-2 in the United Kingdom.
Joseph G Chappell, Theocharis Tsoleridis, Gemma Clark, Louise Berry, Nadine Holmes, Matthew W Loose

J Gen Virol· June 2021

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Readfish enables targeted nanopore sequencing of gigabase-sized genomes.
Alexander Payne, Nadine Holmes, Thomas Clarke, Rory Munro, Bisrat J Debebe, Matthew Loose

Nat Biotechnol· April 2021

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Mathematical modelling of a microRNA-regulated gene network in .
Mainul Haque, John R King, Simon Preston, Matthew Loose, David de Pomerai

Math Biosci Eng· March 2020

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