Publications by authors named "Matthew Rodrigues"

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DNET: A Graph-Based Tool and Workflow for Dynamic Hydrogen-Bond Networks and Applications for Visual Rhodopsins.
Éva Bertalan, Matthew J Rodrigues, Deborah Walter, Gebhard F X Schertler, Ana-Nicoleta Bondar

J Chem Theory Comput· January 2026

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Graph-based algorithms to dissect long-distance water-mediated H-bond networks for conformational couplings in GPCRs.
Éva Bertalan, Matthew Joseph Rodrigues, Gebhard F X Schertler, Ana-Nicoleta Bondar

Br J Pharmacol· July 2025

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Cyclic peptide inhibitors function as molecular glues to stabilize Gq/11 heterotrimers.
Jonas Mühle, Judith Alenfelder, Matthew J Rodrigues, Lars Jürgenliemke, Ramon Guixà-González

Proc Natl Acad Sci U S A· May 2025

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Specific radiation damage to halogenated inhibitors and ligands in protein-ligand crystal structures.
Matthew J Rodrigues, Marc Cabry, Gavin Collie, Michael Carter, Craig McAndrew

J Appl Crystallogr· December 2024

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Active state structures of a bistable visual opsin bound to G proteins.
Oliver Tejero, Filip Pamula, Mitsumasa Koyanagi, Takashi Nagata, Pavel Afanasyev, Matthew J Rodrigues

Nat Commun· October 2024

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Activating an invertebrate bistable opsin with the all-trans 6.11 retinal analog.
Matthew J Rodrigues, Oliver Tejero, Jonas Mühle, Filip Pamula, Ishita Das

Proc Natl Acad Sci U S A· July 2024

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Author Correction: Comparative analysis of feature-based ML and CNN for binucleated erythroblast quantification in myelodysplastic syndrome patients using imaging flow cytometry data.
Carina A Rosenberg, Matthew A Rodrigues, Marie Bill, Maja Ludvigsen

Sci Rep· June 2024

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Imaging Flow Cytometry and Convolutional Neural Network-Based Classification Enable Discrimination of Hematopoietic and Leukemic Stem Cells in Acute Myeloid Leukemia.
Trine Engelbrecht Hybel, Sofie Hesselberg Jensen, Matthew A Rodrigues, Thomas Engelbrecht Hybel, Maya Nautrup Pedersen

Int J Mol Sci· June 2024

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Comparative analysis of feature-based ML and CNN for binucleated erythroblast quantification in myelodysplastic syndrome patients using imaging flow cytometry data.
Carina A Rosenberg, Matthew A Rodrigues, Marie Bill, Maja Ludvigsen

Sci Rep· April 2024

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Application of the Cytokinesis-Block Micronucleus Assay for High-Dose Exposures Using Imaging Flow Cytometry.
Lindsay A Beaton-Green, Jessica M Mayenburg, Leonora Marro, Eman M Hassan, Sarita Cuadros Sanchez, Matthew A Rodrigues

Cytogenet Genome Res· March 2024

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A redox switch allows binding of Fe(II) and Fe(III) ions in the cyanobacterial iron-binding protein FutA from .
Rachel Bolton, Moritz M Machelett, Jack Stubbs, Danny Axford, Nicolas Caramello, Matthew J Rodrigues

Proc Natl Acad Sci U S A· March 2024

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Structural basis of calmodulin modulation of the rod cyclic nucleotide-gated channel.
Diane C A Barret, Dina Schuster, Matthew J Rodrigues, Alexander Leitner, Paola Picotti

Proc Natl Acad Sci U S A· April 2023

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Pyroptosis Markers in Human Primary Specimens: Quantification of Intracellular ASC Specks by Imaging Flow Cytometry and Extracellular Oxidized Mitochondrial by ELISA.
Amy F McLemore, Silvia L Lage, Venina M Dominical, Matthew A Rodrigues, Kathy L McGraw

Methods Mol Biol· April 2023

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The Imaging Flow Cytometry-Based Cytokinesis-Block MicroNucleus (CBMN) Assay.
Ruth C Wilkins, Matthew Rodrigues, Lindsay A Beaton-Green

Methods Mol Biol· April 2023

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Correction of rhodopsin serial crystallography diffraction intensities for a lattice-translocation defect.
Matthew J Rodrigues, Cecilia M Casadei, Tobias Weinert, Valerie Panneels, Gebhard F X Schertler

Acta Crystallogr D Struct Biol· March 2023

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Ultrafast structural changes direct the first molecular events of vision.
Thomas Gruhl, Tobias Weinert, Matthew J Rodrigues, Christopher J Milne, Giorgia Ortolani

Nature· March 2023

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Automation of the Micronucleus Assay Using Imaging Flow Cytometry and Artificial Intelligence.
Matthew A Rodrigues, María Gracia García Mendoza, Raymond Kong, Alexandra Sutton, Haley R Pugsley

J Vis Exp· January 2023

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Discovering cell-active BCL6 inhibitors: effectively combining biochemical HTS with multiple biophysical techniques, X-ray crystallography and cell-based assays.
Olivier A Pierrat, Manjuan Liu, Gavin W Collie, Kartika Shetty, Matthew J Rodrigues

Sci Rep· November 2022

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Somatic gene mutations expose cytoplasmic DNA to co-opt the cGAS/STING/NLRP3 axis in myelodysplastic syndromes.
Amy F McLemore, Hsin-An Hou, Benjamin S Meyer, Nghi B Lam, Grace A Ward, Matthew A Rodrigues

JCI Insight· August 2022

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Optimizing Shape Complementarity Enables the Discovery of Potent Tricyclic BCL6 Inhibitors.
Owen A Davis, Kwai-Ming J Cheung, Alfie Brennan, Matthew G Lloyd, Matthew J Rodrigues

J Med Chem· June 2022

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Trapping and structural characterisation of a covalent intermediate in vitamin B biosynthesis catalysed by the Pdx1 PLP synthase.
Matthew J Rodrigues, Nitai Giri, Antoine Royant, Yang Zhang, Rachel Bolton

RSC Chem Biol· February 2022

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Into Deep Water: Optimizing BCL6 Inhibitors by Growing into a Solvated Pocket.
Matthew G Lloyd, Rosemary Huckvale, Kwai-Ming J Cheung, Matthew J Rodrigues, Gavin W Collie

J Med Chem· December 2021

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Inter-laboratory automation of the in vitro micronucleus assay using imaging flow cytometry and deep learning.
John W Wills, Jatin R Verma, Benjamin J Rees, Danielle S G Harte, Qiellor Haxhiraj, Matthew A Rodrigues

Arch Toxicol· September 2021

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The 3D reconstructed skin micronucleus assay using imaging flow cytometry and deep learning: A proof-of-principle investigation.
Ashley Allemang, Robert Thacker, Richard A DeMarco, Matthew A Rodrigues, Stefan Pfuhler

Mutat Res Genet Toxicol Environ Mutagen· May 2021

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The in vitro micronucleus assay using imaging flow cytometry and deep learning.
Matthew A Rodrigues, Christine E Probst, Artiom Zayats, Bryan Davidson, Michael Riedel

NPJ Syst Biol Appl· May 2021

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