Publications by authors named "Matthew Trotter"

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Multimodal evidence for cerebellar influence on cortical development in autism: structural growth amidst functional disruption.
Federico d'Oleire Uquillas, Esra Sefik, Bing Li, Matthew A Trotter, Kara A Steele

Mol Psychiatry· April 2025

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Correction to: Quantitative Systems Pharmacology Modeling of Avadomide-Induced Neutropenia Enables Virtual Clinical Dose and Schedule Finding Studies.
Roberto A Abbiati, Michael Pourdehnad, Soraya Carrancio, Daniel W Pierce, Shailaja Kasibhatla, Matthew W B Trotter

AAPS J· January 2022

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Ménière's disease: management in primary care.
Neil D McNiven, Peter G Deutsch, J Emmet Carlin, Matthew I Trotter

Br J Gen Pract· December 2021

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Integrative multi-omics identifies high risk multiple myeloma subgroup associated with significant DNA loss and dysregulated DNA repair and cell cycle pathways.
María Ortiz-Estévez, Fadi Towfic, Erin Flynt, Nicholas Stong, In Sock Jang, Matthew W B Trotter

BMC Med Genomics· December 2021

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Quantitative Systems Pharmacology Modeling of Avadomide-Induced Neutropenia Enables Virtual Clinical Dose and Schedule Finding Studies.
Roberto A Abbiati, Michael Pourdehnad, Soraya Carrancio, Daniel W Pierce, Shailaja Kasibhatla, Matthew W B Trotter

AAPS J· August 2021

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Genetic program activity delineates risk, relapse, and therapy responsiveness in multiple myeloma.
Matthew A Wall, Serdar Turkarslan, Wei-Ju Wu, Samuel A Danziger, David J Reiss, Matthew W B Trotter

NPJ Precis Oncol· June 2021

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Bone marrow microenvironments that contribute to patient outcomes in newly diagnosed multiple myeloma: A cohort study of patients in the Total Therapy clinical trials.
Samuel A Danziger, Mark McConnell, Jake Gockley, Mary H Young, Adam Rosenthal, Matthew W B Trotter

PLoS Med· November 2020

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Multiple Myeloma DREAM Challenge reveals epigenetic regulator PHF19 as marker of aggressive disease.
Mike J Mason, Carolina Schinke, Christine L P Eng, Fadi Towfic, Fred Gruber, Matthew Trotter

Leukemia· July 2020

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A generalizable data-driven multicellular model of pancreatic ductal adenocarcinoma.
Boris Aguilar, David L Gibbs, David J Reiss, Mark McConnell, Samuel A Danziger, Matthew Trotter

Gigascience· July 2020

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Microhomology-mediated end joining drives complex rearrangements and overexpression of and in multiple myeloma.
Aneta Mikulasova, Cody Ashby, Ruslana G Tytarenko, Pingping Qu, Adam Rosenthal, Matthew Trotter

Haematologica· April 2020

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ADAPTS: Automated deconvolution augmentation of profiles for tissue specific cells.
Samuel A Danziger, David L Gibbs, Ilya Shmulevich, Mark McConnell, Matthew W B Trotter

PLoS One· April 2020

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Avadomide monotherapy in relapsed/refractory DLBCL: safety, efficacy, and a predictive gene classifier.
Cecilia Carpio, Reda Bouabdallah, Loïc Ysebaert, Juan-Manuel Sancho, Gilles Salles, Matthew W B Trotter

Blood· March 2020

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Leveraging gene expression subgroups to classify DLBCL patients and select for clinical benefit from a novel agent.
Alberto Risueño, Patrick R Hagner, Fadi Towfic, Celia Fontanillo, Amira Djebbari, Matthew W B Trotter

Blood· March 2020

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Integrative network modeling reveals mechanisms underlying T cell exhaustion.
Hamid Bolouri, Mary Young, Joshua Beilke, Rebecca Johnson, Brian Fox, Matthew Trotter

Sci Rep· February 2020

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Large-scale Analyses of Disease Biomarkers and Apremilast Pharmacodynamic Effects.
Irina V Medvedeva, Matthew E Stokes, Dominic Eisinger, Samuel T LaBrie, Jing Ai, Matthew W B Trotter

Sci Rep· January 2020

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A high-risk, Double-Hit, group of newly diagnosed myeloma identified by genomic analysis.
Brian A Walker, Konstantinos Mavrommatis, Christopher P Wardell, T Cody Ashby, Michael Bauer, Matthew Trotter

Leukemia· January 2019

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Comparison of RNA-seq and microarray platforms for splice event detection using a cross-platform algorithm.
Juan P Romero, María Ortiz-Estévez, Ander Muniategui, Soraya Carrancio, Fernando J de Miguel, Matthew W B Trotter

BMC Genomics· September 2018

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Identification of novel mutational drivers reveals oncogene dependencies in multiple myeloma.
Brian A Walker, Konstantinos Mavrommatis, Christopher P Wardell, T Cody Ashby, Michael Bauer, Matthew Trotter

Blood· August 2018

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Co-complex protein membership evaluation using Maximum Entropy on GO ontology and InterPro annotation.
Irina M Armean, Kathryn S Lilley, Matthew W B Trotter, Nicholas C V Pilkington, Sean B Holden

Bioinformatics· June 2018

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Activity of lenalidomide in mantle cell lymphoma can be explained by NK cell-mediated cytotoxicity.
Patrick R Hagner, Hsiling Chiu, Maria Ortiz, Benedetta Apollonio, Maria Wang, Matthew Trotter

Br J Haematol· November 2017

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Global gene expression profiling and senescence biomarker analysis of hESC exposed to HO induced non-cytotoxic oxidative stress.
Maria Barandalla, Hui Shi, Hui Xiao, Silvia Colleoni, Cesare Galli, Matthew Trotter

Stem Cell Res Ther· July 2017

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Corrigendum: Large-scale production of megakaryocytes from human pluripotent stem cells by chemically defined forward programming.
Thomas Moreau, Amanda L Evans, Louella Vasquez, Marloes R Tijssen, Ying Yan, Matthew W Trotter

Nat Commun· July 2017

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Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics.
Lisa M Breckels, Sean B Holden, David Wojnar, Claire M Mulvey, Andy Christoforou, Matthew W B Trotter

PLoS Comput Biol· May 2016

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Large-scale production of megakaryocytes from human pluripotent stem cells by chemically defined forward programming.
Thomas Moreau, Amanda L Evans, Louella Vasquez, Marloes R Tijssen, Ying Yan, Matthew W Trotter

Nat Commun· April 2016

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Brachyury and SMAD signalling collaboratively orchestrate distinct mesoderm and endoderm gene regulatory networks in differentiating human embryonic stem cells.
Tiago Faial, Andreia S Bernardo, Sasha Mendjan, Evangelia Diamanti, Daniel Ortmann, Matthew W B Trotter

Development· June 2015

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