Publications by authors named "Matthieu Jules"

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Multiplex Genome Editing and Regulation in with CRISPR-MAD7.
Nathalie Laforge, Magali Calabre, Matthieu Jules, Anne-Gaëlle Planson

ACS Synth Biol· August 2025

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Comprehensive mapping of transcription terminator Rho utilization (Rut) sites across the Bacillus subtilis genome.
Mildred Delaleau, Vladimir Bidnenko, Eric Eveno, Gergana Kostova, Johnathan C Black, Matthieu Jules

Nucleic Acids Res· August 2025

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The mutational landscape of Bacillus subtilis conditional hypermutators shows how proofreading skews DNA polymerase error rates.
Ira Tanneur, Etienne Dervyn, Cyprien Guérin, Guillaume Kon Kam King, Matthieu Jules

Nucleic Acids Res· February 2025

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Complex sporulation-specific expression of transcription termination factor Rho highlights its involvement in Bacillus subtilis cell differentiation.
Vladimir Bidnenko, Arnaud Chastanet, Christine Péchoux, Yulia Redko-Hamel, Olivier Pellegrini, Matthieu Jules

J Biol Chem· December 2024

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Combining Fusion of Cells with CRISPR-Cas9 Editing for the Cloning of Large DNA Fragments or Complete Bacterial Genomes in Yeast.
Gabrielle Guesdon, Géraldine Gourgues, Fabien Rideau, Thomas Ipoutcha, Lucía Manso-Silván, Matthieu Jules

ACS Synth Biol· November 2023

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What remains from living cells in bacterial lysate-based cell-free systems.
Léa Wagner, Matthieu Jules, Olivier Borkowski

Comput Struct Biotechnol J· May 2023

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Greedy reduction of Bacillus subtilis genome yields emergent phenotypes of high resistance to a DNA damaging agent and low evolvability.
Etienne Dervyn, Anne-Gaëlle Planson, Kosei Tanaka, Victor Chubukov, Cyprien Guérin, Matthieu Jules

Nucleic Acids Res· April 2023

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Termination factor Rho mediates transcriptional reprogramming of Bacillus subtilis stationary phase.
Vladimir Bidnenko, Pierre Nicolas, Cyprien Guérin, Sandra Dérozier, Arnaud Chastanet, Matthieu Jules

PLoS Genet· February 2023

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SppI Forms a Membrane Protein Complex with SppA and Inhibits Its Protease Activity in Bacillus subtilis.
Gabriela Henriques, Stephen McGovern, Jolanda Neef, Minia Antelo-Varela, Friedrich Götz, Matthieu Jules

mSphere· October 2020

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Bacterial growth physiology and RNA metabolism.
Anne-Gaëlle Planson, Vincent Sauveplane, Etienne Dervyn, Matthieu Jules

Biochim Biophys Acta Gene Regul Mech· May 2020

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Differentiation of Vegetative Cells into Spores: a Kinetic Model Applied to Bacillus subtilis.
Emilie Gauvry, Anne-Gabrielle Mathot, Olivier Couvert, Ivan Leguérinel, Matthieu Jules

Appl Environ Microbiol· May 2019

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The logics of metabolic regulation in bacteria challenges biosensor-based metabolic engineering.
Matthieu Jules

Microb Cell· December 2017

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Molecular and Physiological Logics of the Pyruvate-Induced Response of a Novel Transporter in .
Teddy Charbonnier, Dominique Le Coq, Stephen McGovern, Magali Calabre, Olivier Delumeau, Matthieu Jules

mBio· October 2017

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A part toolbox to tune genetic expression in Bacillus subtilis.
Sarah Guiziou, Vincent Sauveplane, Hung-Ju Chang, Caroline Clerté, Nathalie Declerck, Matthieu Jules

Nucleic Acids Res· September 2016

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Translation elicits a growth rate-dependent, genome-wide, differential protein production in Bacillus subtilis.
Olivier Borkowski, Anne Goelzer, Marc Schaffer, Magali Calabre, Ulrike Mäder, Matthieu Jules

Mol Syst Biol· May 2016

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Quantitative prediction of genome-wide resource allocation in bacteria.
Anne Goelzer, Jan Muntel, Victor Chubukov, Matthieu Jules, Eric Prestel

Metab Eng· November 2015

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Transcriptional regulation is insufficient to explain substrate-induced flux changes in Bacillus subtilis.
Victor Chubukov, Markus Uhr, Ludovic Le Chat, Roelco J Kleijn, Matthieu Jules

Mol Syst Biol· November 2013

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Nicotinic acid modulates Legionella pneumophila gene expression and induces virulence traits.
Rachel L Edwards, Andrew Bryan, Matthieu Jules, Kaoru Harada, Carmen Buchrieser

Infect Immun· March 2013

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BasyLiCA: a tool for automatic processing of a Bacterial Live Cell Array.
Leslie Aïchaoui, Matthieu Jules, Ludovic Le Chat, Stéphane Aymerich, Vincent Fromion

Bioinformatics· October 2012

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Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism.
Joerg Martin Buescher, Wolfram Liebermeister, Matthieu Jules, Markus Uhr, Jan Muntel

Science· March 2012

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Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
Pierre Nicolas, Ulrike Mäder, Etienne Dervyn, Tatiana Rochat, Aurélie Leduc, Matthieu Jules

Science· March 2012

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Reconciling molecular regulatory mechanisms with noise patterns of bacterial metabolic promoters in induced and repressed states.
Matthew L Ferguson, Dominique Le Coq, Matthieu Jules, Stéphane Aymerich, Ovidiu Radulescu

Proc Natl Acad Sci U S A· January 2012

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Absolute quantification of gene expression in individual bacterial cells using two-photon fluctuation microscopy.
Matthew L Ferguson, Dominique Le Coq, Matthieu Jules, Stéphane Aymerich, Nathalie Declerck

Anal Biochem· December 2011

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Malate-mediated carbon catabolite repression in Bacillus subtilis involves the HPrK/CcpA pathway.
Frederik M Meyer, Matthieu Jules, Felix M P Mehne, Dominique Le Coq, Jens J Landmann

J Bacteriol· December 2011

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GamA is a eukaryotic-like glucoamylase responsible for glycogen- and starch-degrading activity of Legionella pneumophila.
Vroni Herrmann, Anja Eidner, Kerstin Rydzewski, Inga Blädel, Matthieu Jules

Int J Med Microbiol· February 2011

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