Publications by authors named "Matthieu Muffato"

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A chromosome-level reference genome for the critically endangered Southern Corroboree frog ( ).
Tiffany A Kosch, Lee Berger, Andrew J Crawford, Deon Gilbert, Damian Goodall, Matthieu Muffato

Wellcome Open Res· April 2025

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Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences.
Daqi Yu, Yandong Ren, Masahiro Uesaka, Alan J S Beavan, Matthieu Muffato

Nat Ecol Evol· March 2024

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Reconstruction of hundreds of reference ancestral genomes across the eukaryotic kingdom.
Matthieu Muffato, Alexandra Louis, Nga Thi Thuy Nguyen, Joseph Lucas, Camille Berthelot

Nat Ecol Evol· March 2023

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Scripting Analyses of Genomes in Ensembl Plants.
Bruno Contreras-Moreira, Guy Naamati, Marc Rosello, James E Allen, Sarah E Hunt, Matthieu Muffato

Methods Mol Biol· March 2022

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Ensembl 2022.
Fiona Cunningham, James E Allen, Jamie Allen, Jorge Alvarez-Jarreta, M Ridwan Amode, Matthieu Muffato

Nucleic Acids Res· January 2022

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Ensembl Genomes 2022: an expanding genome resource for non-vertebrates.
Andrew D Yates, James Allen, Ridwan M Amode, Andrey G Azov, Matthieu Barba, Matthieu Muffato

Nucleic Acids Res· January 2022

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Ensembl 2021.
Kevin L Howe, Premanand Achuthan, James Allen, Jamie Allen, Jorge Alvarez-Jarreta, Matthieu Muffato

Nucleic Acids Res· January 2021

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Publisher Correction: The tuatara genome reveals ancient features of amniote evolution.
Neil J Gemmell, Kim Rutherford, Stefan Prost, Marc Tollis, David Winter, Matthieu Muffato

Nature· September 2020

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The tuatara genome reveals ancient features of amniote evolution.
Neil J Gemmell, Kim Rutherford, Stefan Prost, Marc Tollis, David Winter, Matthieu Muffato

Nature· August 2020

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The Quest for Orthologs benchmark service and consensus calls in 2020.
Adrian M Altenhoff, Javier Garrayo-Ventas, Salvatore Cosentino, David Emms, Natasha M Glover, Matthieu Muffato

Nucleic Acids Res· July 2020

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Ensembl Genomes 2020-enabling non-vertebrate genomic research.
Kevin L Howe, Bruno Contreras-Moreira, Nishadi De Silva, Gareth Maslen, Wasiu Akanni, Matthieu Muffato

Nucleic Acids Res· January 2020

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Ensembl 2020.
Andrew D Yates, Premanand Achuthan, Wasiu Akanni, James Allen, Jamie Allen, Matthieu Muffato

Nucleic Acids Res· January 2020

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Advances and Applications in the Quest for Orthologs.
Natasha Glover, Christophe Dessimoz, Ingo Ebersberger, Sofia K Forslund, Toni Gabaldón, Matthieu Muffato

Mol Biol Evol· October 2019

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Ensembl 2019.
Fiona Cunningham, Premanand Achuthan, Wasiu Akanni, James Allen, M Ridwan Amode, Matthieu Muffato

Nucleic Acids Res· January 2019

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The comparative genomics and complex population history of baboons.
Jeffrey Rogers, Muthuswamy Raveendran, R Alan Harris, Thomas Mailund, Kalle Leppälä, Matthieu Muffato

Sci Adv· January 2019

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Repeat associated mechanisms of genome evolution and function revealed by the and genomes.
David Thybert, Maša Roller, Fábio C P Navarro, Ian Fiddes, Ian Streeter, Matthieu Muffato

Genome Res· April 2018

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Gearing up to handle the mosaic nature of life in the quest for orthologs.
Kristoffer Forslund, Cecile Pereira, Salvador Capella-Gutierrez, Alan Sousa da Silva, Adrian Altenhoff, Matthieu Muffato

Bioinformatics· January 2018

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Ensembl 2018.
Daniel R Zerbino, Premanand Achuthan, Wasiu Akanni, M Ridwan Amode, Daniel Barrell, Matthieu Muffato

Nucleic Acids Res· January 2018

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Ensembl 2017.
Bronwen L Aken, Premanand Achuthan, Wasiu Akanni, M Ridwan Amode, Friederike Bernsdorff, Matthieu Muffato

Nucleic Acids Res· January 2017

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Ensembl comparative genomics resources.
Javier Herrero, Matthieu Muffato, Kathryn Beal, Stephen Fitzgerald, Leo Gordon

Database (Oxford)· October 2016

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ncRNA orthologies in the vertebrate lineage.
Miguel Pignatelli, Albert J Vilella, Matthieu Muffato, Leo Gordon, Simon White

Database (Oxford)· October 2016

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Ensembl comparative genomics resources.
Javier Herrero, Matthieu Muffato, Kathryn Beal, Stephen Fitzgerald, Leo Gordon

Database (Oxford)· August 2016

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Standardized benchmarking in the quest for orthologs.
Adrian M Altenhoff, Brigitte Boeckmann, Salvador Capella-Gutierrez, Daniel A Dalquen, Todd DeLuca, Matthieu Muffato

Nat Methods· May 2016

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Ensembl 2016.
Andrew Yates, Wasiu Akanni, M Ridwan Amode, Daniel Barrell, Konstantinos Billis, Matthieu Muffato

Nucleic Acids Res· January 2016

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Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream.
Brigitte Boeckmann, Marina Marcet-Houben, Jonathan A Rees, Kristoffer Forslund, Jaime Huerta-Cepas, Matthieu Muffato

Genome Biol Evol· July 2015

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