Publications by authors named "Mehran Karimzadeh"

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Detection of Early-Stage Colorectal Cancer Using Cell-Free oncRNA Biomarkers and Artificial Intelligence.
Amir Momen-Roknabadi, Mehran Karimzadeh, Nae-Chyun Chen, Taylor B Cavazos, Jieyang Wang

Clin Cancer Res· August 2025

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Deep generative AI models analyzing circulating orphan non-coding RNAs enable detection of early-stage lung cancer.
Mehran Karimzadeh, Amir Momen-Roknabadi, Taylor B Cavazos, Yuqi Fang, Nae-Chyun Chen

Nat Commun· November 2024

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Integrative identification of non-coding regulatory regions driving metastatic prostate cancer.
Brian J Woo, Ruhollah Moussavi-Baygi, Heather Karner, Mehran Karimzadeh, Hassan Yousefi

Cell Rep· September 2024

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Human papillomavirus integration transforms chromatin to drive oncogenesis.
Mehran Karimzadeh, Christopher Arlidge, Ariana Rostami, Mathieu Lupien, Scott V Bratman

Genome Biol· June 2023

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Integrative identification of non-coding regulatory regions driving metastatic prostate cancer.
Brian J Woo, Ruhollah Moussavi-Baygi, Heather Karner, Mehran Karimzadeh, Kristle Garcia

bioRxiv· June 2023

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The molecular consequences of androgen activity in the human breast.
Florian Raths, Mehran Karimzadeh, Nathan Ing, Andrew Martinez, Yoona Yang

Cell Genom· March 2023

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Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity.
Caitriona M McEvoy, Julia M Murphy, Lin Zhang, Sergi Clotet-Freixas, Jessica A Mathews, Mehran Karimzadeh

Nat Commun· December 2022

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Virtual ChIP-seq: predicting transcription factor binding by learning from the transcriptome.
Mehran Karimzadeh, Michael M Hoffman

Genome Biol· June 2022

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Cell-Cell Contact Mediates Gene Expression and Fate Choice of Human Neural Stem/Progenitor Cells.
William B McIntyre, Mehran Karimzadeh, Yasser Riazalhosseini, Mohamad Khazaei, Michael G Fehlings

Cells· May 2022

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Multiscale interactome analysis coupled with off-target drug predictions reveals drug repurposing candidates for human coronavirus disease.
Michael G Sugiyama, Haotian Cui, Dar'ya S Redka, Mehran Karimzadeh, Edurne Rujas

Sci Rep· December 2021

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Experimental and natural evidence of SARS-CoV-2-infection-induced activation of type I interferon responses.
Arinjay Banerjee, Nader El-Sayes, Patrick Budylowski, Rajesh Abraham Jacob, Daniel Richard, Mehran Karimzadeh

iScience· May 2021

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Massively multiplex single-molecule oligonucleosome footprinting.
Nour J Abdulhay, Colin P McNally, Laura J Hsieh, Sivakanthan Kasinathan, Aidan Keith, Mehran Karimzadeh

Elife· December 2020

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Umap and Bismap: quantifying genome and methylome mappability.
Mehran Karimzadeh, Carl Ernst, Anshul Kundaje, Michael M Hoffman

Nucleic Acids Res· November 2018

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Top considerations for creating bioinformatics software documentation.
Mehran Karimzadeh, Michael M Hoffman

Brief Bioinform· July 2018

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A General Framework for Interrogation of mRNA Stability Programs Identifies RNA-Binding Proteins that Govern Cancer Transcriptomes.
Gabrielle Perron, Pouria Jandaghi, Shraddha Solanki, Maryam Safisamghabadi, Cristina Storoz, Mehran Karimzadeh

Cell Rep· May 2018

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Aberration hubs in protein interaction networks highlight actionable targets in cancer.
Mehran Karimzadeh, Pouria Jandaghi, Andreas I Papadakis, Sebastian Trainor, Johan Rung

Oncotarget· May 2018

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Variation in genomic landscape of clear cell renal cell carcinoma across Europe.
Ghislaine Scelo, Yasser Riazalhosseini, Liliana Greger, Louis Letourneau, Mar Gonzàlez-Porta, Mehran Karimzadeh

Nat Commun· October 2014

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