Publications by authors named "Meredith E Protas"

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Comparative Embryology and Transcriptomics of Asellus infernus, an Isopod Crustacean From Sulfidic Groundwater.
Haeli J Lomheim, Lizet Reyes Rodas, Devon Price, Serban M Sarbu, Raluca I Băncilă, Meredith E Protas

Evol Dev· September 2025

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Transcriptomic analysis of cave, surface, and hybrid samples of the isopod Asellus aquaticus and identification of chromosomal location of candidate genes for cave phenotype evolution.
Haeli J Lomheim, Lizet Reyes Rodas, Lubna Mulla, Layla Freeborn, Dennis A Sun, Meredith E Protas

Evodevo· May 2023

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Developmental Transcriptomic Analysis of the Cave-Dwelling Crustacean, .
Joshua B Gross, Dennis A Sun, Brian M Carlson, Sivan Brodo-Abo, Meredith E Protas

Genes (Basel)· December 2019

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Embryonic origin and genetic basis of cave associated phenotypes in the isopod crustacean Asellus aquaticus.
Hafasa Mojaddidi, Franco E Fernandez, Priscilla A Erickson, Meredith E Protas

Sci Rep· November 2018

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Common Genetic Basis of Eye and Pigment Loss in Two Distinct Cave Populations of the Isopod Crustacean Asellus aquaticus.
Cassandra Re, Žiga Fišer, Justin Perez, Allyson Tacdol, Peter Trontelj, Meredith E Protas

Integr Comp Biol· September 2018

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Mutations of conserved non-coding elements of PITX2 in patients with ocular dysgenesis and developmental glaucoma.
Meredith E Protas, Eric Weh, Tim Footz, Jay Kasberger, Scott C Baraban

Hum Mol Genet· September 2017

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A Transcriptomic Analysis of Cave, Surface, and Hybrid Isopod Crustaceans of the Species Asellus aquaticus.
Bethany A Stahl, Joshua B Gross, Daniel I Speiser, Todd H Oakley, Nipam H Patel, Meredith E Protas

PLoS One· June 2016

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Opsin Repertoire and Expression Patterns in Horseshoe Crabs: Evidence from the Genome of Limulus polyphemus (Arthropoda: Chelicerata).
Barbara-Anne Battelle, Joseph F Ryan, Karen E Kempler, Spencer R Saraf, Catherine E Marten, Meredith E Protas

Genome Biol Evol· June 2016

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Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.
Daniel I Speiser, M Sabrina Pankey, Alexander K Zaharoff, Barbara A Battelle, Heather D Bracken-Grissom, Meredith E Protas

BMC Bioinformatics· November 2014

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Genetic basis of eye and pigment loss in the cave crustacean, Asellus aquaticus.
Meredith E Protas, Peter Trontelj, Nipam H Patel

Proc Natl Acad Sci U S A· April 2011

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Knockdown of Parhyale Ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology.
Danielle M Liubicich, Julia M Serano, Anastasios Pavlopoulos, Zacharias Kontarakis, Meredith E Protas

Proc Natl Acad Sci U S A· August 2009

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Evolution of coloration patterns.
Meredith E Protas, Nipam H Patel

Annu Rev Cell Dev Biol· December 2008

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Genetic analysis of cavefish reveals molecular convergence in the evolution of albinism.
Meredith E Protas, Candace Hersey, Dawn Kochanek, Yi Zhou, Horst Wilkens

Nat Genet· January 2006

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Reduce your pelvis in 10000 years or less.
Meredith E Protas, Clifford J Tabin

Dev Cell· May 2004

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