Publications by authors named "Michael A Boemo"

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A high-resolution, nanopore-based artificial intelligence assay for DNA replication stress in human cancer cells.
Mathew J K Jones, Subash Kumar Rai, Pauline L Pfuderer, Alexis Bonfim-Melo, Julia K Pagan, Michael A Boemo

Nat Commun· August 2025

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ecDNA replication is disorganized and vulnerable to replication stress.
Jedrzej J Jaworski, Pauline L Pfuderer, Pawel Czyz, Gianluca Petris, Michael A Boemo

Nucleic Acids Res· July 2025

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Regulation of replication timing in Saccharomyces cerevisiae.
Rosie Berners-Lee, Eamonn Gilmore, Francisco Berkemeier, Michael A Boemo

PLoS Comput Biol· June 2025

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DNA replication timing reveals genome-wide features of transcription and fragility.
Francisco Berkemeier, Peter R Cook, Michael A Boemo

Nat Commun· May 2025

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DNA replication dynamics are associated with genome composition in Plasmodium species.
Francis Isidore Garcia Totañes, Sarah E Chapman, Subash Kumar Rai, Mathew J K Jones, Michael A Boemo

Nucleic Acids Res· February 2025

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A genome-wide map of DNA replication at single-molecule resolution in the malaria parasite Plasmodium falciparum.
Francis Isidore Garcia Totañes, Jonas Gockel, Sarah E Chapman, Richárd Bártfai, Michael A Boemo

Nucleic Acids Res· April 2023

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Replication stress generates distinctive landscapes of DNA copy number alterations and chromosome scale losses.
Nadeem Shaikh, Alice Mazzagatti, Simone De Angelis, Sarah C Johnson, Bjorn Bakker, Michael A Boemo

Genome Biol· October 2022

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DNAscent v2: detecting replication forks in nanopore sequencing data with deep learning.
Michael A Boemo

BMC Genomics· June 2021

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An Autonomous Oscillation Times and Executes Centriole Biogenesis.
Mustafa G Aydogan, Thomas L Steinacker, Mohammad Mofatteh, Zachary M Wilmott, Felix Y Zhou, Michael A Boemo

Cell· June 2020

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The Beacon Calculus: A formal method for the flexible and concise modelling of biological systems.
Michael A Boemo, Luca Cardelli, Conrad A Nieduszynski

PLoS Comput Biol· March 2020

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Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads.
Carolin A Müller, Michael A Boemo, Paolo Spingardi, Benedikt M Kessler, Skirmantas Kriaucionis

Nat Methods· May 2019

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Mathematical modelling of a hypoxia-regulated oncolytic virus delivered by tumour-associated macrophages.
Michael A Boemo, Helen M Byrne

J Theor Biol· January 2019

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The Formal Language and Design Principles of Autonomous DNA Walker Circuits.
Michael A Boemo, Alexandra E Lucas, Andrew J Turberfield, Luca Cardelli

ACS Synth Biol· August 2016

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