Publications by authors named "Michael A Martin"

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HIV drug resistance during antiretroviral therapy scale-up in Uganda, 2012-19: a population-based, longitudinal study.
Michael A Martin, Steven James Reynolds, Brian T Foley, Fred Nalugoda, Thomas C Quinn

Lancet Microbe· November 2025

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Patterns of HIV-1 viral load suppression and drug resistance during the dolutegravir transition: a population-based longitudinal study.
Michael A Martin, Alexandra Blenkinsop, Michelle Moffa, Steven James Reynolds, Fred Nalugoda

medRxiv· September 2025

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Genetic drift acts strongly on within-host influenza virus populations during acute infection but does not act alone.
Yike Teresa Shi, Michael A Martin, Daniel B Weissman, Katia Koelle

bioRxiv· August 2025

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Quantifying prevalence and risk factors of HIV multiple infection in Uganda from population-based deep-sequence data.
Michael A Martin, Andrea Brizzi, Xiaoyue Xi, Ronald Moses Galiwango, Sikhulile Moyo

PLoS Pathog· April 2025

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Population dynamics of HIV drug resistance during treatment scale-up in Uganda: a population-based longitudinal study.
Michael A Martin, Steven James Reynolds, Brian T Foley, Fred Nalugoda, Thomas C Quinn

medRxiv· October 2024

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Intra- and inter-subtype HIV diversity between 1994 and 2018 in southern Uganda: a longitudinal population-based study.
Seungwon Kim, Godfrey Kigozi, Michael A Martin, Ronald M Galiwango, Thomas C Quinn

Virus Evol· August 2024

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Influenza A genomic diversity during human infections underscores the strength of genetic drift and the existence of tight transmission bottlenecks.
Michael A Martin, Nick Berg, Katia Koelle

Virus Evol· June 2024

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Increasing intra- and inter-subtype HIV diversity despite declining HIV incidence in Uganda.
Seungwon Kim, Godfrey Kigozi, Michael A Martin, Ronald M Galiwango, Thomas C Quinn

medRxiv· March 2024

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Transmission Bottleneck Size Estimation from De Novo Viral Genetic Variation.
Yike Teresa Shi, Jeremy D Harris, Michael A Martin, Katia Koelle

Mol Biol Evol· January 2024

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Within-host evolutionary dynamics and tissue compartmentalization during acute SARS-CoV-2 infection.
Mireille Farjo, Katia Koelle, Michael A Martin, Laura L Gibson, Kimberly K O Walden

J Virol· January 2024

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Transmission bottleneck size estimation from viral genetic variation.
Teresa Shi, Jeremy D Harris, Michael A Martin, Katia Koelle

bioRxiv· August 2023

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Epidemiological inference for emerging viruses using segregating sites.
Yeongseon Park, Michael A Martin, Katia Koelle

Nat Commun· May 2023

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Pre-epidemic evolution of the MRSA USA300 clade and a molecular key for classification.
Colleen M Bianco, Ahmed M Moustafa, Kelsey O'Brien, Michael A Martin, Timothy D Read

Front Cell Infect Microbiol· February 2023

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The changing epidemiology of SARS-CoV-2.
Katia Koelle, Michael A Martin, Rustom Antia, Ben Lopman, Natalie E Dean

Science· March 2022

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Unrecognized introductions of SARS-CoV-2 into the US state of Georgia shaped the early epidemic.
Ahmed Babiker, Michael A Martin, Charles Marvil, Stephanie Bellman, Robert A Petit Iii

Virus Evol· February 2022

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Comment on "Genomic epidemiology of superspreading events in Austria reveals mutational dynamics and transmission properties of SARS-CoV-2".
Michael A Martin, Katia Koelle

Sci Transl Med· October 2021

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Insights from SARS-CoV-2 sequences.
Michael A Martin, David VanInsberghe, Katia Koelle

Science· January 2021

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Full genome viral sequences inform patterns of SARS-CoV-2 spread into and within Israel.
Danielle Miller, Michael A Martin, Noam Harel, Omer Tirosh, Talia Kustin

Nat Commun· November 2020

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Revealing fine-scale spatiotemporal differences in SARS-CoV-2 introduction and spread.
Gage K Moreno, Katarina M Braun, Kasen K Riemersma, Michael A Martin, Peter J Halfmann

Nat Commun· November 2020

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Distinct patterns of SARS-CoV-2 transmission in two nearby communities in Wisconsin, USA.
Gage K Moreno, Katarina M Braun, Kasen K Riemersma, Michael A Martin, Peter J Halfmann

medRxiv· July 2020

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The impact of a history of poor mental health on health care costs in the perinatal period.
Catherine Chojenta, Jananie William, Michael A Martin, Julie Byles, Deborah Loxton

Arch Womens Ment Health· August 2019

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Exploratory Study of 6-Month Pain Trajectories in Individuals With Predominant Patellofemoral Osteoarthritis: A Cohort Study.
Kathryn Mills, Jillian P Eyles, Michael A Martin, Mark J Hancock, David J Hunter

J Orthop Sports Phys Ther· January 2019

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Within-host Mycobacterium tuberculosis diversity and its utility for inferences of transmission.
Michael A Martin, Robyn S Lee, Lauren A Cowley, Jennifer L Gardy, William P Hanage

Microb Genom· October 2018

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No barrier to emergence of bathyal king crabs on the Antarctic shelf.
Richard B Aronson, Kathryn E Smith, Stephanie C Vos, James B McClintock, Margaret O Amsler, Michael A Martin

Proc Natl Acad Sci U S A· October 2015

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Abacavir pharmacogenetics--from initial reports to standard of care.
Michael A Martin, Deanna L Kroetz

Pharmacotherapy· July 2013

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