Publications by authors named "Michael Blinov"

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Verification and reproducible curation of the BioModels repository.
Lucian P Smith, Rahuman S Malik-Sheriff, Tung V N Nguyen, Henning Hermjakob, Jonathan Karr, Michael L Blinov

PLoS Comput Biol· December 2025

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Visualizing mechanistic models by integrating site-specific molecular details into reaction networks.
Dan Vasilescu, James C Schaff, Ion I Moraru, Michael L Blinov

Front Mol Biosci· December 2025

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Verification and reproducible curation of the BioModels repository.
Lucian Smith, Rahuman S Malik-Sheriff, Tung V N Nguyen, Henning Hermjakob, Jonathan Karr, Michael L Blinov

bioRxiv· June 2025

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Leveraging public AI tools to explore systems biology resources in mathematical modeling.
Meera Kannan, Gabrielle Bridgewater, Ming Zhang, Michael L Blinov

NPJ Syst Biol Appl· February 2025

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From FAIR to CURE: Guidelines for Computational Models of Biological Systems.
Herbert M Sauro, Eran Agmon, Michael L Blinov, John H Gennari, Joe Hellerstein

ArXiv· February 2025

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From spots to stripes: Evolution of pigmentation patterns in monkeyflowers via modulation of a reaction-diffusion system and its prepatterns.
Mei Liang, Lee Ringham, Changning Ye, Xu Yan, Nathan Schaumburger, Michael Blinov

bioRxiv· January 2025

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Immune digital twins for complex human pathologies: applications, limitations, and challenges.
Anna Niarakis, Reinhard Laubenbacher, Gary An, Yaron Ilan, Jasmin Fisher, Michael L Blinov

NPJ Syst Biol Appl· November 2024

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Editorial: Network-based mathematical modeling in cell and developmental biology.
Michael L Blinov, Susan D Mertins

Front Cell Dev Biol· August 2024

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bnglViz: online visualization of rule-based models.
Noah Liguori-Bills, Michael L Blinov

Bioinformatics· June 2024

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Mixed selling of different poultry species facilitates emergence of public-health-threating avian influenza viruses.
Zhen Wang, Hongkui Li, Yuhan Li, Zhuanli Wu, Hui Ai, Michael L Blinov

Emerg Microbes Infect· December 2023

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MolClustPy: a Python package to characterize multivalent biomolecular clusters.
Aniruddha Chattaraj, Indivar Nalagandla, Leslie M Loew, Michael L Blinov

Bioinformatics· June 2023

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Dynamic model assuming mutually inhibitory biomarkers of frailty suggests bistability with contrasting mobility phenotypes.
Nathan Schaumburger, Joel Pally, Ion I Moraru, Jatupol Kositsawat, George A Kuchel, Michael L Blinov

Front Netw Physiol· May 2023

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MolClustPy: A Python Package to Characterize Multivalent Biomolecular Clusters.
Aniruddha Chattaraj, Indivar Nalagandla, Leslie M Loew, Michael L Blinov

bioRxiv· March 2023

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BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Bilal Shaikh, Lucian P Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Michael L Blinov

Nucleic Acids Res· July 2022

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SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks.
Adrien Rougny, Vasundra Touré, John Albanese, Dagmar Waltemath, Denis Shirshov, Michael L Blinov

Brief Bioinform· September 2021

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RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats.
Bilal Shaikh, Gnaneswara Marupilla, Mike Wilson, Michael L Blinov, Ion I Moraru

Nucleic Acids Res· July 2021

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The solubility product extends the buffering concept to heterotypic biomolecular condensates.
Aniruddha Chattaraj, Michael L Blinov, Leslie M Loew

Elife· July 2021

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SBML Level 3: an extensible format for the exchange and reuse of biological models.
Sarah M Keating, Dagmar Waltemath, Matthias König, Fengkai Zhang, Andreas Dräger, Michael L Blinov

Mol Syst Biol· August 2020

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Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2.
Fengkai Zhang, Lucian P Smith, Michael L Blinov, James Faeder, William S Hlavacek

J Integr Bioinform· July 2020

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Systems biology graphical notation markup language (SBGNML) version 0.3.
Frank T Bergmann, Tobias Czauderna, Ugur Dogrusoz, Adrien Rougny, Andreas Dräger, Michael L Blinov

J Integr Bioinform· June 2020

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The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE).
Dagmar Waltemath, Martin Golebiewski, Michael L Blinov, Padraig Gleeson, Henning Hermjakob

J Integr Bioinform· June 2020

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ModelBricks-modules for reproducible modeling improving model annotation and provenance.
Ann E Cowan, Pedro Mendes, Michael L Blinov

NPJ Syst Biol Appl· April 2020

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Two MYB Proteins in a Self-Organizing Activator-Inhibitor System Produce Spotted Pigmentation Patterns.
Baoqing Ding, Erin L Patterson, Srinidhi V Holalu, Jingjian Li, Grace A Johnson, Michael L Blinov

Curr Biol· March 2020

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Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.
Adrien Rougny, Vasundra Touré, Stuart Moodie, Irina Balaur, Tobias Czauderna, Michael L Blinov

J Integr Bioinform· June 2019

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Corrigendum to: Report: NIA Workshop on Measures of Physiologic Resiliencies in Human Aging.
Evan C Hadley, George A Kuchel, Anne B Newman, Heather G Allore, Jenna M Bartley, Michael L Blinov

J Gerontol A Biol Sci Med Sci· June 2018

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