Publications by authors named "Michael Holst"

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3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries.
Christopher T Lee, Justin G Laughlin, Nils Angliviel de La Beaumelle, Rommie E Amaro, J Andrew McCammon, Michael Holst

PLoS Comput Biol· April 2020

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An Open-Source Mesh Generation Platform for Biophysical Modeling Using Realistic Cellular Geometries.
Christopher T Lee, Justin G Laughlin, John B Moody, Rommie E Amaro, J Andrew McCammon, Michael Holst

Biophys J· March 2020

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Stability Analysis of a Bulk-Surface Reaction Model for Membrane Protein Clustering.
Lucas M Stolerman, Michael Getz, Stefan G Llewellyn Smith, Michael Holst, Padmini Rangamani

Bull Math Biol· February 2020

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Applications and Challenges of Machine Learning to Enable Realistic Cellular Simulations.
Ritvik Vasan, Meagan P Rowan, Christopher T Lee, Gregory R Johnson, Padmini Rangamani, Michael Holst

Front Phys· January 2020

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The Implementation of the Colored Abstract Simplicial Complex and its Application to Mesh Generation.
Christopher T Lee, John B Moody, Rommie E Amaro, J Andrew McCammon, Michael J Holst

ACM Trans Math Softw· August 2019

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Improvements to the APBS biomolecular solvation software suite.
Elizabeth Jurrus, Dave Engel, Keith Star, Kyle Monson, Juan Brandi, Michael J Holst

Protein Sci· January 2018

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Reliability assessment for large-scale molecular dynamics approximations.
Francesca Grogan, Michael Holst, Lee Lindblom, Rommie Amaro

J Chem Phys· December 2017

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High-order finite element methods for cardiac monodomain simulations.
Kevin P Vincent, Matthew J Gonzales, Andrew K Gillette, Christopher T Villongco, Simone Pezzuto, Michael J Holst

Front Physiol· August 2015

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Detecting glaucoma progression from localized rates of retinal changes in parametric and nonparametric statistical framework with type I error control.
Madhusudhanan Balasubramanian, Ery Arias-Castro, Felipe A Medeiros, David J Kriegman, Christopher Bowd, Michael Holst

Invest Ophthalmol Vis Sci· March 2014

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Multi-core CPU or GPU-accelerated Multiscale Modeling for Biomolecular Complexes.
Tao Liao, Yongjie Zhang, Peter M Kekenes-Huskey, Yuhui Cheng, Anushka Michailova, Michael Holst

Mol Based Math Biol· July 2013

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Feature-preserving surface mesh smoothing via suboptimal Delaunay triangulation.
Zhanheng Gao, Zeyun Yu, Michael Holst

Graph Models· January 2013

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Quality Tetrahedral Mesh Smoothing via Boundary-Optimized Delaunay Triangulation.
Zhanheng Gao, Zeyun Yu, Michael Holst

Comput Aided Geom Des· December 2012

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Modeling effects of L-type ca(2+) current and na(+)-ca(2+) exchanger on ca(2+) trigger flux in rabbit myocytes with realistic T-tubule geometries.
Peter M Kekenes-Huskey, Yuhui Cheng, Johan E Hake, Frank B Sachse, John H Bridge, Michael J Holst

Front Physiol· October 2012

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Modelling cardiac calcium sparks in a three-dimensional reconstruction of a calcium release unit.
Johan Hake, Andrew G Edwards, Zeyun Yu, Peter M Kekenes-Huskey, Anushka P Michailova, Michael J Holst

J Physiol· September 2012

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Localized glaucomatous change detection within the proper orthogonal decomposition framework.
Madhusudhanan Balasubramanian, David J Kriegman, Christopher Bowd, Michael Holst, Robert N Weinreb

Invest Ophthalmol Vis Sci· June 2012

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ADAPTIVE FINITE ELEMENT MODELING TECHNIQUES FOR THE POISSON-BOLTZMANN EQUATION.
Michael Holst, James Andrew McCammon, Zeyun Yu, Youngcheng Zhou, Yunrong Zhu

Commun Comput Phys· January 2012

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Multiscale modeling of calcium dynamics in ventricular myocytes with realistic transverse tubules.
Zeyun Yu, Guangming Yao, Masahiko Hoshijima, Anushka Michailova, Michael Holst

IEEE Trans Biomed Eng· October 2011

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Numerical analysis of Ca2+ signaling in rat ventricular myocytes with realistic transverse-axial tubular geometry and inhibited sarcoplasmic reticulum.
Yuhui Cheng, Zeyun Yu, Masahiko Hoshijima, Michael J Holst, Andrew D McCulloch

PLoS Comput Biol· October 2010

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Poisson-Nernst-Planck Equations for Simulating Biomolecular Diffusion-Reaction Processes I: Finite Element Solutions.
Benzhuo Lu, Michael J Holst, J Andrew McCammon, Y C Zhou

J Comput Phys· September 2010

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Multiscale modeling in rodent ventricular myocytes.
Shaoying Lu, Anushka Michailova, Jeffrey Saucerman, Yuhui Cheng, Zeyun Yu, Michael Holst

IEEE Eng Med Biol Mag· August 2009

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Three-dimensional electron microscopy reveals new details of membrane systems for Ca2+ signaling in the heart.
Takeharu Hayashi, Maryann E Martone, Zeyun Yu, Andrea Thor, Masahiro Doi, Michael J Holst

J Cell Sci· April 2009

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Adaptive Finite Element Method for Solving the Exact Kohn-Sham Equation of Density Functional Theory.
Eric J Bylaska, Michael Holst, John H Weare

J Chem Theory Comput· April 2009

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Finite element analysis of drug electrostatic diffusion: inhibition rate studies in N1 neuraminidase.
Yuhui Cheng, Michael J Holst, J A McCammon

Pac Symp Biocomput· March 2009

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Three-dimensional geometric modeling of membrane-bound organelles in ventricular myocytes: bridging the gap between microscopic imaging and mathematical simulation.
Zeyun Yu, Michael J Holst, Takeharu Hayashi, Chandrajit L Bajaj, Mark H Ellisman

J Struct Biol· December 2008

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A Nonlinear Elasticity Model of Macromolecular Conformational Change Induced by Electrostatic Forces.
Y C Zhou, Michael Holst, J Andrew McCammon

J Math Anal Appl· April 2008

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