Publications by authors named "Michael Hoopmann"

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Evidence for improved DNA repair in the long-lived bowhead whale.
Denis Firsanov, Max Zacher, Xiao Tian, Todd L Sformo, Yang Zhao, Michael R Hoopmann

Nature· December 2025

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Author Correction: Evidence for improved DNA repair in the long-lived bowhead whale.
Denis Firsanov, Max Zacher, Xiao Tian, Todd L Sformo, Yang Zhao, Michael R Hoopmann

Nature· December 2025

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Real-Time Instrument Control across Multiple Orbitrap Platforms through a Single Software Interface.
Michael R Hoopmann, Christopher D McGann, Jesse D Canterbury, Priska D von Haller, Devin K Schweppe

J Proteome Res· October 2025

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Nova: A Library for Rapid Development of Mass Spectrometry Software Applications.
Michael R Hoopmann, Christopher D McGann, Christopher M Rose, Devin K Schweppe

J Am Soc Mass Spectrom· August 2025

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Limelight: An Open, Web-Based Tool for Visualizing, Sharing, and Analyzing Mass Spectrometry Data from DDA Pipelines.
Michael Riffle, Alex Zelter, Daniel Jaschob, Michael R Hoopmann, Danielle A Faivre

J Proteome Res· April 2025

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A Special Software Issue in Celebration of Margaret Dayhoff's 100th Birthday.
Magnus Palmblad, Michael R Hoopmann, Viktoria Dorfer

J Proteome Res· March 2025

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Detection and Quantification of Drug-Protein Adducts in Human Liver.
Alex Zelter, Michael Riffle, David D Shteynberg, Guo Zhong, Ellen B Riddle, Michael R Hoopmann

J Proteome Res· November 2024

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Proteomic changes induced by longevity-promoting interventions in mice.
Adam R Burns, Jack Wiedrick, Alicia Feryn, Michal Maes, Mukul K Midha, Michael R Hoopmann

Geroscience· April 2024

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Biomonitoring of lead in blood of children living in a former mining area in Lower Saxony, Germany.
Sonja Strieker, Katja Radon, Felix Forster, Özlem Köseoglu Örnek, Laura Wengenroth, Michael Hoopmann

Environ Sci Pollut Res Int· April 2024

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Structural surfaceomics reveals an AML-specific conformation of integrin β as a CAR T cellular therapy target.
Kamal Mandal, Gianina Wicaksono, Clinton Yu, Jarrett J Adams, Michael R Hoopmann

Nat Cancer· November 2023

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Author Correction: Lifespan-extending interventions induce consistent patterns of fatty acid oxidation in mouse livers.
Kengo Watanabe, Tomasz Wilmanski, Priyanka Baloni, Max Robinson, Gonzalo G Garcia, Michael R Hoopmann

Commun Biol· November 2023

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The Association of Biomolecular Resource Facilities Proteome Informatics Research Group Study on Metaproteomics (iPRG-2020).
Pratik D Jagtap, Michael R Hoopmann, Benjamin A Neely, Antony Harvey, Lukas Käll

J Biomol Tech· September 2023

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A revised concept for deriving reference values for internal exposures to chemical substances and its application to population-representative biomonitoring data in German children and adolescents 2014-2017 (GerES V).
Michael Hoopmann, Aline Murawski, Michael Schümann, Thomas Göen, Petra Apel

Int J Hyg Environ Health· August 2023

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Lifespan-extending interventions induce consistent patterns of fatty acid oxidation in mouse livers.
Kengo Watanabe, Tomasz Wilmanski, Priyanka Baloni, Max Robinson, Gonzalo G Garcia, Michael R Hoopmann

Commun Biol· July 2023

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Integrating Genetics, Transcriptomics, and Proteomics in Lung Tissue to Investigate Chronic Obstructive Pulmonary Disease.
Yu-Hang Zhang, Michael H Cho, Jarrett D Morrow, Peter J Castaldi, Craig P Hersh, Michael R Hoopmann

Am J Respir Cell Mol Biol· June 2023

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The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data.
Attila Kertesz-Farkas, Frank Lawrence Nii Adoquaye Acquaye, Kishankumar Bhimani, Jimmy K Eng, William E Fondrie, Michael R Hoopmann

J Proteome Res· February 2023

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Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline.
Michael R Hoopmann, David D Shteynberg, Alex Zelter, Michael Riffle, Andrew S Lyon

J Proteome Res· February 2023

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Trans-Proteomic Pipeline: Robust Mass Spectrometry-Based Proteomics Data Analysis Suite.
Eric W Deutsch, Luis Mendoza, David D Shteynberg, Michael R Hoopmann, Zhi Sun

J Proteome Res· February 2023

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2023 Special Issue on Software Tools and Resources: Accelerating Research with New and Evolving Open Source Software.
Michael R Hoopmann, Veit Schwämmle, Magnus Palmblad

J Proteome Res· February 2023

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Residential proximity to oil and gas production sites and hematologic malignancies: A case-control study.
Felix Forster, Ronald Herrera, Michael Hoopmann, Joachim Kieschke, Bernhilde Deitermann

Am J Ind Med· December 2022

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Discovery and Visualization of Uncharacterized Drug-Protein Adducts Using Mass Spectrometry.
Michael Riffle, Michael R Hoopmann, Daniel Jaschob, Guo Zhong, Robert L Moritz

Anal Chem· March 2022

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Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period.
Frank Maixner, Mohamed S Sarhan, Kun D Huang, Adrian Tett, Alexander Schoenafinger, Michael R Hoopmann

Curr Biol· December 2021

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Lung proteomic biomarkers associated with chronic obstructive pulmonary disease.
Yu-Hang Zhang, Michael R Hoopmann, Peter J Castaldi, Kirsten A Simonsen, Mukul K Midha

Am J Physiol Lung Cell Mol Physiol· December 2021

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Plasmodium falciparum Calcium-Dependent Protein Kinase 4 is Critical for Male Gametogenesis and Transmission to the Mosquito Vector.
Sudhir Kumar, Meseret T Haile, Michael R Hoopmann, Linh T Tran, Samantha A Michaels

mBio· December 2021

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2021 Special Issue on Software Tools and Resources: Finding the Right Tools for the Job.
Susan T Weintraub, Michael R Hoopmann, Magnus Palmblad

J Proteome Res· April 2021

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