Publications by authors named "Michihira Tagami"

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Kinome analysis of Madurella mycetomatis identified kinases in the cell wall integrity pathway as novel potential therapeutic drug targets in eumycetoma caused by Madurella mycetomatis.
Mickey Konings, Nikolaos Strepis, Ri-Ichiroh Manabe, Akira Hasegawa, Somdatta Chaudhari, Michihira Tagami

PLoS Negl Trop Dis· September 2025

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Isoform analysis of heterozygous putative splicing variants at the allele level using nanopore long-read sequencing.
Kokoro Ozaki, Takashi Irioka, Shohei Noma, Akira Machida, Moe Fukunaga, Michihira Tagami

Sci Rep· August 2025

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Iron regulatory pathways differentially expressed during Madurella mycetomatis grain development in Galleria mellonella.
Imad Abugessaisa, Mickey Konings, Ri-Ichiroh Manabe, Cathal M Murphy, Tsugumi Kawashima, Michihira Tagami

Nat Commun· June 2025

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Update of the FANTOM web resource: enhancement for studying noncoding genomes.
Tomoe Nobusada, Chi Wai Yip, Saumya Agrawal, Jessica Severin, Imad Abugessaisa, Michihira Tagami

Nucleic Acids Res· January 2025

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Biallelic GGGCC repeat expansion leading to NAXE-related mitochondrial encephalopathy.
Kokoro Ozaki, Yukiko Yatsuka, Yoshinobu Oyazato, Atsushi Nishiyama, Kazuhiro R Nitta, Michihira Tagami

NPJ Genom Med· October 2024

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Production of a heterozygous exon skipping model of common marmosets using gene-editing technology.
Kenya Sato, Hiroki Sasaguri, Wakako Kumita, Tetsushi Sakuma, Tomoe Morioka, Michihira Tagami

Lab Anim (NY)· September 2024

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OVCH1 Antisense RNA 1 is differentially expressed between non-frail and frail old adults.
Imad Abugessaisa, Ri-Ichiroh Manabe, Tsugumi Kawashima, Michihira Tagami, Chitose Takahashi

Geroscience· April 2024

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Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types.
Chi Wai Yip, Chung-Chau Hon, Kayoko Yasuzawa, Divya M Sivaraman, Jordan A Ramilowski, Michihira Tagami

Cell Rep· December 2022

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Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs.
Michiel de Hoon, Alessandro Bonetti, Charles Plessy, Yoshinari Ando, Chung-Chau Hon, Michihira Tagami

Genome Res· September 2022

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High quality genome assembly of the anhydrobiotic midge provides insights on a single chromosome-based emergence of extreme desiccation tolerance.
Yuki Yoshida, Nurislam Shaikhutdinov, Olga Kozlova, Masayoshi Itoh, Michihira Tagami

NAR Genom Bioinform· June 2022

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Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.
Mathys Grapotte, Manu Saraswat, Chloé Bessière, Christophe Menichelli, Jordan A Ramilowski, Michihira Tagami

Nat Commun· March 2022

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The choice of negative control antisense oligonucleotides dramatically impacts downstream analysis depending on the cellular background.
Luca Ducoli, Saumya Agrawal, Chung-Chau Hon, Jordan A Ramilowski, Eliane Sibler, Michihira Tagami

BMC Genom Data· September 2021

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Publisher Correction: Nanopore sequencing reveals TACC2 locus complexity and diversity of isoforms transcribed from an intronic promoter.
Yosuke Ito, Yasuhisa Terao, Shohei Noma, Michihira Tagami, Emiko Yoshida

Sci Rep· August 2021

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Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.
Mathys Grapotte, Manu Saraswat, Chloé Bessière, Christophe Menichelli, Jordan A Ramilowski, Michihira Tagami

Nat Commun· June 2021

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Nanopore sequencing reveals TACC2 locus complexity and diversity of isoforms transcribed from an intronic promoter.
Yosuke Ito, Yasuhisa Terao, Shohei Noma, Michihira Tagami, Emiko Yoshida

Sci Rep· April 2021

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FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs.
Imad Abugessaisa, Jordan A Ramilowski, Marina Lizio, Jesicca Severin, Akira Hasegawa, Michihira Tagami

Nucleic Acids Res· January 2021

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Functional annotation of human long noncoding RNAs via molecular phenotyping.
Jordan A Ramilowski, Chi Wai Yip, Saumya Agrawal, Jen-Chien Chang, Yari Ciani, Michihira Tagami

Genome Res· July 2020

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The genome sequence of Streptomyces rochei 7434AN4, which carries a linear chromosome and three characteristic linear plasmids.
Yosi Nindita, Zhisheng Cao, Amirudin Akhmad Fauzi, Aiko Teshima, Yuya Misaki, Michihira Tagami

Sci Rep· July 2019

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FANTOM5 CAGE profiles of human and mouse samples.
Shuhei Noguchi, Takahiro Arakawa, Shiro Fukuda, Masaaki Furuno, Akira Hasegawa, Michihira Tagami

Sci Data· August 2017

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Eprobe-mediated screening system for somatic mutations in the KRAS locus.
Jun Atsumi, Takeshi Hanami, Yasuaki Enokida, Hiroomi Ogawa, Diane Delobel, Michihira Tagami

Oncol Rep· June 2015

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The tap-tpg gene pair on the linear plasmid functions to maintain a linear topology of the chromosome in Streptomyces rochei.
Yosi Nindita, Zhisheng Cao, Yingjie Yang, Kenji Arakawa, Yuh Shiwa, Michihira Tagami

Mol Microbiol· March 2015

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A promoter-level mammalian expression atlas.

Nature· March 2014

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Effects of the turn-back primer on intermediate product generation in isothermal DNA amplification.
Yuki Tanaka, Yasumasa Kimura, Yasumasa Mitani, Yuki Kawai, Alexander Lezhava, Michihira Tagami

Biotechniques· December 2010

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A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus).
Cecilia Castaño-Sánchez, Kanako Fuji, Akiyuki Ozaki, Osamu Hasegawa, Takashi Sakamoto, Michihira Tagami

BMC Genomics· October 2010

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The combination of gene perturbation assay and ChIP-chip reveals functional direct target genes for IRF8 in THP-1 cells.
Atsutaka Kubosaki, Gabriella Lindgren, Michihira Tagami, Christophe Simon, Yasuhiro Tomaru

Mol Immunol· August 2010

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