Publications by authors named "Moritz E Beber"

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BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Bilal Shaikh, Lucian P Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Moritz E Beber

Nucleic Acids Res· July 2022

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eQuilibrator 3.0: a database solution for thermodynamic constant estimation.
Moritz E Beber, Mattia G Gollub, Dana Mozaffari, Kevin M Shebek, Avi I Flamholz

Nucleic Acids Res· January 2022

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Long-Term Effects of a Web-Based Low-FODMAP Diet Versus Probiotic Treatment for Irritable Bowel Syndrome, Including Shotgun Analyses of Microbiota: Randomized, Double-Crossover Clinical Trial.
Dorit Vedel Ankersen, Petra Weimers, Mette Bennedsen, Anne Birgitte Haaber, Eva Lund Fjordside, Moritz Emanuel Beber

J Med Internet Res· December 2021

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multiTFA: a Python package for multi-variate thermodynamics-based flux analysis.
Vishnuvardhan Mahamkali, Tim McCubbin, Moritz Emanuel Beber, Elad Noor, Esteban Marcellin

Bioinformatics· September 2021

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The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.
Samuel M D Seaver, Filipe Liu, Qizhi Zhang, James Jeffryes, José P Faria, Moritz E Beber

Nucleic Acids Res· January 2021

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The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.
Samuel M D Seaver, Filipe Liu, Qizhi Zhang, James Jeffryes, José P Faria, Moritz E Beber

Nucleic Acids Res· January 2021

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Author Correction: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism.
Hongzhong Lu, Feiran Li, Benjamín J Sánchez, Zhengming Zhu, Gang Li, Moritz Emanuel Beber

Nat Commun· October 2020

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Community standards to facilitate development and address challenges in metabolic modeling.
Maureen A Carey, Andreas Dräger, Moritz E Beber, Jason A Papin, James T Yurkovich

Mol Syst Biol· August 2020

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Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing.
Christian Lieven, Moritz E Beber, Brett G Olivier, Frank T Bergmann, Meric Ataman

Nat Biotechnol· April 2020

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MEMOTE for standardized genome-scale metabolic model testing.
Christian Lieven, Moritz E Beber, Brett G Olivier, Frank T Bergmann, Meric Ataman

Nat Biotechnol· March 2020

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A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism.
Hongzhong Lu, Feiran Li, Benjamín J Sánchez, Zhengming Zhu, Gang Li, Moritz Emanuel Beber

Nat Commun· August 2019

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Effect of database drift on network topology and enrichment analyses: a case study for RegulonDB.
Moritz E Beber, Georgi Muskhelishvili, Marc-Thorsten Hütt

Database (Oxford)· October 2016

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Artefacts in statistical analyses of network motifs: general framework and application to metabolic networks.
Moritz Emanuel Beber, Christoph Fretter, Shubham Jain, Nikolaus Sonnenschein, Matthias Müller-Hannemann

J R Soc Interface· December 2012

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