Publications by authors named "Muyu Yang"

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DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks.
Wenduo Cheng, Zhenqiao Song, Yang Zhang, Shike Wang, Danqing Wang, Muyu Yang

Nat Commun· November 2025

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Heimdall: A Modular Framework for Tokenization in Single-Cell Foundation Models.
Ellie Haber, Shahul Alam, Nicholas Ho, Renming Liu, Evan Trop, Muyu Yang

bioRxiv· November 2025

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Capturing Compensatory Reserve in Sarcopenia: A Bioengineering Framework for Multidimensional Temporal Analysis of Center-of-Pressure Signals.
Qinghe Zhao, Qing Xiao, Yu Chen, Muyu Yang, Lunzhi Dai

Bioengineering (Basel)· October 2025

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MineVisual: A Battery-Free Visual Perception Scheme in Coal Mine.
Ming Li, Zhongxu Bao, Shuting Li, Xu Yang, Qiang Niu, Muyu Yang

Sensors (Basel)· September 2025

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FCP-Former: Enhancing Long-Term Multivariate Time Series Forecasting with Frequency Compensation.
Ming Li, Muyu Yang, Shaolong Chen, Huangyongxiang Li, Gaosong Xing

Sensors (Basel)· September 2025

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Complete sequencing of ape genomes.
DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A Logsdon, Muyu Yang, Yang Zhang

Nature· May 2025

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Population-scale cellular GUIDE-seq-2 and biochemical CHANGE-seq-R profiles reveal human genetic variation frequently affects Cas9 off-target activity.
Cicera R Lazzarotto, Yichao Li, Ashley R Flory, Jacqueline Chyr, Muyu Yang

bioRxiv· February 2025

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DNALongBench: A Benchmark Suite for Long-Range DNA Prediction Tasks.
Wenduo Cheng, Zhenqiao Song, Yang Zhang, Shike Wang, Danqing Wang, Muyu Yang

bioRxiv· January 2025

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Peroral cholangioscopy-guided diagnosis and treatment of Clonorchis sinensis liver flukes.
Li-Ying Tao, Hong-Guang Wang, Qing-Mei Guo, Shi-Zhu Liu, Xiang Guo, Mu-Yu Yang

Endoscopy· December 2024

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Complete sequencing of ape genomes.
DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A Logsdon, Muyu Yang, Yang Zhang

bioRxiv· October 2024

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Applying interpretable machine learning in computational biology-pitfalls, recommendations and opportunities for new developments.
Valerie Chen, Muyu Yang, Wenbo Cui, Joon Sik Kim, Ameet Talwalkar

Nat Methods· August 2024

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Computational methods for analysing multiscale 3D genome organization.
Yang Zhang, Lorenzo Boninsegna, Muyu Yang, Tom Misteli, Frank Alber

Nat Rev Genet· February 2024

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Interkingdom Hormonal Regulations between Plants and Animals Provide New Insight into Food Safety.
Hang-Yuan Cheng, Wen Wang, Wei Wang, Mu-Yu Yang, Yu-Yi Zhou

J Agric Food Chem· January 2024

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UNADON: Transformer-based model to predict genome-wide chromosome spatial position.
Muyu Yang, Jian Ma

ArXiv· July 2023

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UNADON: transformer-based model to predict genome-wide chromosome spatial position.
Muyu Yang, Jian Ma

Bioinformatics· June 2023

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Changes in cropland soil carbon through improved management practices in China: A meta-analysis.
Bai-Jian Lin, Ruo-Chen Li, Mu-Yu Yang, Zheng-Rong Kan, Ahmad Latif Virk

J Environ Manage· March 2023

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Effects of tillage and cropping sequences on crop production and environmental benefits in the North China Plain.
Wen-Xuan Liu, Wen-Sheng Liu, Mu-Yu Yang, Yu-Xin Wei, Zhe Chen

Environ Sci Pollut Res Int· February 2023

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Machine Learning Methods for Exploring Sequence Determinants of 3D Genome Organization.
Muyu Yang, Jian Ma

J Mol Biol· August 2022

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[Effects of PD-L1 on immunosuppression of bacterial sepsis and its relevant mechanism].
Fang Wang, Mu-Yu Yang, Bin Wang, Zhen-Li Qu, Qing-Ru Hu

Zhongguo Ying Yong Sheng Li Xue Za Zhi· November 2021

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Cancer mutational signatures representation by large-scale context embedding.
Yang Zhang, Yunxuan Xiao, Muyu Yang, Jian Ma

Bioinformatics· July 2020

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