Publications by authors named "Natalie Shih"

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DTC-Flow: a flow cytometry-based detection platform for characterizing bone marrow disseminated tumor cells in breast cancer.
Elizabeth M Chislock, Tien-Chi Pan, Dhruv Pant, Yan Chen, George Woodfield, Natalie N C Shih

NPJ Breast Cancer· November 2025

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Targeting dormant tumor cells to prevent recurrent breast cancer: a randomized phase 2 trial.
Angela DeMichele, Amy S Clark, Emily Shea, Lauren J Bayne, Christopher J Sterner, Natalie Shih

Nat Med· October 2025

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Uncertainty-aware ensemble of foundation models differentiates glioblastoma from its mimics.
Junhan Zhao, Shih-Yen Lin, Raphaël Attias, Liza Mathews, Christian Engel, Shih-Chieh Lin, Natalie Nc Shih

Nat Commun· September 2025

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Intra-tumoral Preservation of the Stem-like Malignant Cell Proportion in Glioblastoma, Prognostic Impact, and its Radiomethylomic Signatures.
Yuji Matsumoto, Omkar Singh, Jose Garcia, Zied Abdullaev, Nelson F Freeburg, Natalie N C Shih

Neuro Oncol· July 2025

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Multimodal Spatial Profiling Reveals Immune Suppression and Microenvironment Remodeling in Fallopian Tube Precursors to High-Grade Serous Ovarian Carcinoma.
Tanjina Kader, Jia-Ren Lin, Clemens B Hug, Shannon Coy, Yu-An Chen, Natalie Shih

Cancer Discov· June 2025

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Impact of BRCA mutations, age, surgical indication, and hormone status on the molecular phenotype of the human Fallopian tube.
Ian Beddows, Svetlana Djirackor, Dalia K Omran, Euihye Jung, Natalie Nc Shih

Nat Commun· March 2025

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Multimodal Spatial Profiling Reveals Immune Suppression and Microenvironment Remodeling in Fallopian Tube Precursors to High-Grade Serous Ovarian Carcinoma.
Tanjina Kader, Jia-Ren Lin, Clemens Hug, Shannon Coy, Yu-An Chen, Natalie Shih

bioRxiv· September 2024

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Rare subclonal sequencing of breast cancers indicates putative metastatic driver mutations are predominately acquired after dissemination.
Matthew R Lawrence-Paul, Tien-Chi Pan, Dhruv K Pant, Natalie N C Shih, Yan Chen

Genome Med· February 2024

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Exploiting the CD200-CD200R immune checkpoint axis in multiple myeloma to enhance CAR T-cell therapy.
Yan Tang, Wei Liu, Siddhant Kadu, Omar Johnson, Zainul S Hasanali, Natalie Shih

Blood· January 2024

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Prognostic correlations with the microbiome of breast cancer subtypes.
Sagarika Banerjee, Zhi Wei, Tian Tian, Dipayan Bose, Natalie N C Shih

Cell Death Dis· September 2021

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Computationally Derived Cribriform Area Index from Prostate Cancer Hematoxylin and Eosin Images Is Associated with Biochemical Recurrence Following Radical Prostatectomy and Is Most Prognostic in Gleason Grade Group 2.
Patrick Leo, Sacheth Chandramouli, Xavier Farré, Robin Elliott, Andrew Janowczyk, Natalie N C Shih

Eur Urol Focus· July 2021

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Genomic landscape of metastatic breast cancer identifies preferentially dysregulated pathways and targets.
Matt R Paul, Tien-Chi Pan, Dhruv K Pant, Natalie Nc Shih, Yan Chen

J Clin Invest· August 2020

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Microbiome signatures in prostate cancer.
Sagarika Banerjee, James C Alwine, Zhi Wei, Tian Tian, Natalie Shih

Carcinogenesis· July 2019

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Identifying the morphologic basis for radiomic features in distinguishing different Gleason grades of prostate cancer on MRI: Preliminary findings.
Gregory Penzias, Asha Singanamalli, Robin Elliott, Jay Gollamudi, Natalie Shih

PLoS One· January 2019

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Stable and discriminating features are predictive of cancer presence and Gleason grade in radical prostatectomy specimens: a multi-site study.
Patrick Leo, Robin Elliott, Natalie N C Shih, Sanjay Gupta, Michael Feldman

Sci Rep· October 2018

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High-throughput adaptive sampling for whole-slide histopathology image analysis (HASHI) via convolutional neural networks: Application to invasive breast cancer detection.
Angel Cruz-Roa, Hannah Gilmore, Ajay Basavanhally, Michael Feldman, Shridar Ganesan, Natalie Shih

PLoS One· July 2018

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Distinct Microbial Signatures Associated With Different Breast Cancer Types.
Sagarika Banerjee, Tian Tian, Zhi Wei, Natalie Shih, Michael D Feldman

Front Microbiol· May 2018

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Comparative clinical utility of tumor genomic testing and cell-free DNA in metastatic breast cancer.
Kara N Maxwell, Danielle Soucier-Ernst, Emin Tahirovic, Andrea B Troxel, Candace Clark, Natalie Shih

Breast Cancer Res Treat· August 2017

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Erratum to: Comparative clinical utility of tumor genomic testing and cell-free DNA in metastatic breast cancer.
Kara N Maxwell, Danielle Soucier-Ernst, Emin Tahirovic, Andrea B Troxel, Candace Clark, Natalie Shih

Breast Cancer Res Treat· August 2017

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Microbial Signatures Associated with Oropharyngeal and Oral Squamous Cell Carcinomas.
Sagarika Banerjee, Tian Tian, Zhi Wei, Kristen N Peck, Natalie Shih

Sci Rep· June 2017

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The ovarian cancer oncobiome.
Sagarika Banerjee, Tian Tian, Zhi Wei, Natalie Shih, Michael D Feldman

Oncotarget· May 2017

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Accurate and reproducible invasive breast cancer detection in whole-slide images: A Deep Learning approach for quantifying tumor extent.
Angel Cruz-Roa, Hannah Gilmore, Ajay Basavanhally, Michael Feldman, Shridar Ganesan, Natalie N C Shih

Sci Rep· April 2017

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Evaluating stability of histomorphometric features across scanner and staining variations: prostate cancer diagnosis from whole slide images.
Patrick Leo, George Lee, Natalie N C Shih, Robin Elliott, Michael D Feldman

J Med Imaging (Bellingham)· October 2016

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AutoStitcher: An Automated Program for Efficient and Robust Reconstruction of Digitized Whole Histological Sections from Tissue Fragments.
Gregory Penzias, Andrew Janowczyk, Asha Singanamalli, Mirabela Rusu, Natalie Shih

Sci Rep· July 2016

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Self-renewal of CD133(hi) cells by IL6/Notch3 signalling regulates endocrine resistance in metastatic breast cancer.
Pasquale Sansone, Claudio Ceccarelli, Marjan Berishaj, Qing Chang, Vinagolu K Rajasekhar, Natalie N C Shih

Nat Commun· February 2016

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