Publications by authors named "Nathan Brandt"

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The role of flour type and feeding schedule on the sourdough microbiome.
Sima Taheri, Enrique Schwarzkopf, Hanna L Berman, Nathan Brandt, Jessica McNeill

Microbiol Spectr· November 2025

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Impacts of temperature on recombination rate and meiotic success in thermotolerant and cold-tolerant yeast species.
Jessica McNeill, Nathan Brandt, Enrique J Schwarzkopf, Mili Jimenez, Caiti Smukowski Heil

Heredity (Edinb)· August 2025

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Template switching during DNA replication is a prevalent source of adaptive gene amplification.
Julie N Chuong, Nadav Ben Nun, Ina Suresh, Julia Cano Matthews, Titir De, Nathan Brandt

Elife· February 2025

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The recombination landscape of introgression in yeast.
Enrique J Schwarzkopf, Nathan Brandt, Caiti Smukowski Heil

PLoS Genet· February 2025

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Template switching during DNA replication is a prevalent source of adaptive gene amplification.
Julie N Chuong, Nadav Ben Nun, Ina Suresh, Julia Cano Matthews, Titir De, Nathan Brandt

bioRxiv· October 2024

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Temperature affects recombination rate plasticity and meiotic success between thermotolerant and cold tolerant yeast species.
Jessica McNeill, Nathan Brandt, Enrique J Schwarzkopf, Mili Jimenez, Caiti Smukowski Heil

bioRxiv· August 2024

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The recombination landscape of introgression in yeast.
Enrique J Schwarzkopf, Nathan Brandt, Caiti Smukowski Heil

bioRxiv· July 2024

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Multiple Copies of in Paraburkholderia unamae Regulate Flagellar Gene Expression, Motility, and Biofilm Formation.
Shelley N-M Thai, Michelle R Lum, Jeanine Naegle, Michael Onofre, Hassan Abdulla, Nathan Brandt

J Bacteriol· November 2021

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Genetic interaction profiles of regulatory kinases differ between environmental conditions and cellular states.
Siyu Sun, Anastasia Baryshnikova, Nathan Brandt, David Gresham

Mol Syst Biol· May 2020

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A complete statistical model for calibration of RNA-seq counts using external spike-ins and maximum likelihood theory.
Rodoniki Athanasiadou, Benjamin Neymotin, Nathan Brandt, Wei Wang, Lionel Christiaen

PLoS Comput Biol· March 2019

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Single-cell copy number variant detection reveals the dynamics and diversity of adaptation.
Stephanie Lauer, Grace Avecilla, Pieter Spealman, Gunjan Sethia, Nathan Brandt

PLoS Biol· December 2018

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Systematic identification of factors mediating accelerated mRNA degradation in response to changes in environmental nitrogen.
Darach Miller, Nathan Brandt, David Gresham

PLoS Genet· May 2018

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An incoherent feedforward loop facilitates adaptive tuning of gene expression.
Jungeui Hong, Nathan Brandt, Farah Abdul-Rahman, Ally Yang, Tim Hughes

Elife· April 2018

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Steady-state and dynamic gene expression programs in Saccharomyces cerevisiae in response to variation in environmental nitrogen.
Edoardo M Airoldi, Darach Miller, Rodoniki Athanasiadou, Nathan Brandt, Farah Abdul-Rahman

Mol Biol Cell· April 2016

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The use of chemostats in microbial systems biology.
Naomi Ziv, Nathan J Brandt, David Gresham

J Vis Exp· October 2013

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System-level analysis of genes and functions affecting survival during nutrient starvation in Saccharomyces cerevisiae.
David Gresham, Viktor M Boer, Amy Caudy, Naomi Ziv, Nathan J Brandt

Genetics· January 2011

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Rett syndrome: clinical manifestations in males with MECP2 mutations.
Bruria Ben Zeev, Yuval Yaron, N Carolyn Schanen, Haika Wolf, Nathan Brandt

J Child Neurol· January 2002

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