Publications by authors named "Nathaniel D Tippens"

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Comprehensive evaluation of diverse massively parallel reporter assays to functionally characterize human enhancers genome-wide.
Junke Zhang, Alden King-Yung Leung, Yutong Zhu, Li Yao, Avery Willis, Nathaniel D Tippens

Genome Biol· November 2025

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YAP controls cell migration and invasion through a Rho GTPase switch.
Sagar R Shah, Chunxiao Ren, Nathaniel D Tippens, JinSeok Park, Ahmed Mohyeldin

Sci Signal· May 2025

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Simultaneous measurement of intrinsic promoter and enhancer potential reveals principles of functional duality and regulatory reciprocity.
Mauricio I Paramo, Alden King-Yung Leung, Sagar R Shah, Junke Zhang, Nathaniel D Tippens

Res Sq· May 2025

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Simultaneous measurement of intrinsic promoter and enhancer potential reveals principles of functional duality and regulatory reciprocity.
Mauricio I Paramo, Alden King-Yung Leung, Sagar R Shah, Junke Zhang, Nathaniel D Tippens

bioRxiv· March 2025

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Single-cell nascent RNA sequencing unveils coordinated global transcription.
Dig B Mahat, Nathaniel D Tippens, Jorge D Martin-Rufino, Sean K Waterton, Jiayu Fu

Nature· July 2024

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Single-cell nascent RNA sequencing using click-chemistry unveils coordinated transcription.
Dig B Mahat, Nathaniel D Tippens, Jorge D Martin-Rufino, Sean K Waterton, Jiayu Fu

bioRxiv· September 2023

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Autocatalytic base editing for RNA-responsive translational control.
Raphaël V Gayet, Katherine Ilia, Shiva Razavi, Nathaniel D Tippens, Makoto A Lalwani

Nat Commun· March 2023

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RNA-responsive elements for eukaryotic translational control.
Evan M Zhao, Angelo S Mao, Helena de Puig, Kehan Zhang, Nathaniel D Tippens

Nat Biotechnol· April 2022

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Transcription imparts architecture, function and logic to enhancer units.
Nathaniel D Tippens, Jin Liang, Alden King-Yung Leung, Shayne D Wierbowski, Abdullah Ozer

Nat Genet· October 2020

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A massively parallel barcoded sequencing pipeline enables generation of the first ORFeome and interactome map for rice.
Shayne D Wierbowski, Tommy V Vo, Pascal Falter-Braun, Timothy O Jobe, Lars H Kruse, Nathaniel D Tippens

Proc Natl Acad Sci U S A· May 2020

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Nascent RNA analyses: tracking transcription and its regulation.
Erin M Wissink, Anniina Vihervaara, Nathaniel D Tippens, John T Lis

Nat Rev Genet· December 2019

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methyl-ATAC-seq measures DNA methylation at accessible chromatin.
Roman Spektor, Nathaniel D Tippens, Claudia A Mimoso, Paul D Soloway

Genome Res· June 2019

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Single-molecule nascent RNA sequencing identifies regulatory domain architecture at promoters and enhancers.
Jacob M Tome, Nathaniel D Tippens, John T Lis

Nat Genet· November 2018

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Enhancer transcription: what, where, when, and why?
Nathaniel D Tippens, Anniina Vihervaara, John T Lis

Genes Dev· January 2018

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Brachyury-YAP Regulatory Axis Drives Stemness and Growth in Cancer.
Sagar R Shah, Justin M David, Nathaniel D Tippens, Ahmed Mohyeldin, Juan C Martinez-Gutierrez

Cell Rep· October 2017

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iRegNet3D: three-dimensional integrated regulatory network for the genomic analysis of coding and non-coding disease mutations.
Siqi Liang, Nathaniel D Tippens, Yaoda Zhou, Matthew Mort, Peter D Stenson

Genome Biol· January 2017

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Disease Model of GATA4 Mutation Reveals Transcription Factor Cooperativity in Human Cardiogenesis.
Yen-Sin Ang, Renee N Rivas, Alexandre J S Ribeiro, Rohith Srivas, Janell Rivera, Nathaniel D Tippens

Cell· December 2016

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