Publications by authors named "Neil Hayes"

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ELViS: an R package for estimating copy number levels of viral genomic segments at base-resolution.
Jin Young Lee, Jeremiah R Holt, Xiaobei Zhao, Katherine A Hoadley, D Neil Hayes

Bioinformatics· December 2025

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Clonal Hematopoiesis of Indeterminate Potential and Cardiovascular Mortality in Patients with ESKD: A Pilot Case-Control Study.
Usha Kumari, Zhongji Han, Yamini Mallisetty, Chi-Yang Chiu, Guillem Castro-Bono, D Neil Hayes

Clin J Am Soc Nephrol· November 2025

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The offonome reveals on and off states of gene expression near the detection limit of RNA-seq.
Won-Young Choi, Xiaobei Zhao, Jeremiah Holt, Richa Jain, Heejoon Jo, D Neil Hayes

Sci Rep· November 2025

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Alterations of TGFBR2 and KRAS in cemento-osseous dysplasia of the jaw.
Adepitan A Owosho, Shokoufeh Shahrabi-Farahani, Osariemen Okhuaihesuyi, Jeremiah Holt, Xiaobei Zhao, D Neil Hayes

Oral Surg Oral Med Oral Pathol Oral Radiol· October 2025

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Identification of Susceptibility Loci Using a Novel Murine Model for Triple Negative Breast Cancer.
Minjeong Kim, Logan G McGrath, Zeid T Mustafa, Samson Eugin Simon, Naveed Pervaiz, D Neil Hayes

G3 (Bethesda)· October 2025

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Lung Adenocarcinoma Just Desserts: An Expanding Pie of Activating Oncogenes or a Layer Cake of Integrated Alterations.
Minjeong Kim, Wisut Lamlertthon, Heejoon Jo, Yan Cui, Hyo Young Choi, D Neil Hayes

bioRxiv· September 2025

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An FGFR-p53 developmental signaling axis drives salivary cancer progression.
Adele M Musicant, Julia M R Billington, Jeffrey S Damrauer, Jennifer L Modliszewski, Luane J B Landau, D Neil Hayes

Oncogene· August 2025

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Correction: An FGFR-p53 developmental signaling axis drives salivary cancer progression.
Adele M Musicant, Julia M R Billington, Jeffrey S Damrauer, Jennifer L Modliszewski, Luane J B Landau, D Neil Hayes

Oncogene· August 2025

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Pan-cancer immune and stromal deconvolution predicts clinical outcomes and mutation profiles.
Bhavneet Bhinder, Verena Friedl, Sunantha Sethuraman, Davide Risso, Kami E Chiotti, D Neil Hayes

Sci Rep· July 2025

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Protected Time, Resources, and Expectations for Academic Oncology Clinical Research Physicians.
David E Gerber, Nikhil I Khushalani, Ang Gao, Song Zhang, Jeffrey W Clark, D Neil Hayes

J Natl Compr Canc Netw· July 2025

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Association between Locoregional Failure and NFE2L2/KEAP1/CUL3 Mutations in NRG/RTOG 9512: A Randomized Trial of Radiation Fractionation in T2N0 Glottic Cancer.
Li Guan, Pedro A Torres-Saavedra, Xiaobei Zhao, Michael B Major, Brittany J Holmes, D Neil Hayes

Clin Cancer Res· May 2025

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Performance of 8 Smoking Metrics for Modeling Survival in Head and Neck Squamous Cell Carcinoma.
Andrew C L Lam, Katrina Hueniken, Martha Pienkowski, John J W Lee, Mei Dong, D Neil Hayes

JAMA Otolaryngol Head Neck Surg· April 2025

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A molecular switch from tumor suppressor to oncogene in ER+ve breast cancer: Role of androgen receptor, JAK-STAT, and lineage plasticity.
Sarah Asemota, Wendy Effah, Jeremiah Holt, Daniel Johnson, Linnea Cripe, D Neil Hayes

Proc Natl Acad Sci U S A· October 2024

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Single-cell chromatin accessibility reveals malignant regulatory programs in primary human cancers.
Laksshman Sundaram, Arvind Kumar, Matthew Zatzman, Adriana Salcedo, Neal Ravindra, D Neil Hayes

Science· September 2024

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Smoking and alcohol by HPV status in head and neck cancer: a Mendelian randomization study.
Abhinav Thakral, John Jw Lee, Tianzhichao Hou, Katrina Hueniken, Tom Dudding, D Neil Hayes

Nat Commun· September 2024

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FXR Agonism with Bile Acid Mimetic Reduces Pre-Clinical Triple-Negative Breast Cancer Burden.
Sydney C Joseph, Samson Eugin Simon, Margaret S Bohm, Minjeong Kim, Madeline E Pye, D Neil Hayes

Cancers (Basel)· March 2024

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For Squamous Cancers, the Streetlamps Shine on Occasional Keys, Most Baskets Are Empty, and the Umbrellas Cannot Keep Us Dry: A Call for New Models in Precision Oncology.
D Neil Hayes, Oluchukwu Oluoha, David L Schwartz

J Clin Oncol· February 2024

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Diagnostic accuracy of HPV16 early antigen serology for HPV-driven oropharyngeal cancer is independent of age and sex.
Johannes M A Kusters, Brenda Diergaarde, Andrew Ness, Maarten F Schim van der Loeff, Janneke C M Heijne, D Neil Hayes

Int J Cancer· January 2024

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Towards an Explainable AI Platform to Study Interruptions in Cancer Radiation Therapy.
Arash Shaban-Nejad, Nariman Ammar, Fekede Kumsa, Soheil Hashtarkhani, Brianna White, Neil Hayes

Stud Health Technol Inform· January 2024

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Identification of a targetable JAK-STAT enriched androgen receptor and androgen receptor splice variant positive triple-negative breast cancer subtype.
Sarah Asemota, Wendy Effah, Kirsten L Young, Jeremiah Holt, Linnea Cripe, D Neil Hayes

Cell Rep· December 2023

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Protein kinase C delta regulates mononuclear phagocytes and hinders response to immunotherapy in cancer.
Mehdi Chaib, Jeremiah R Holt, Emilie L Fisher, Laura M Sipe, Margaret S Bohm, D Neil Hayes

Sci Adv· December 2023

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HN-CLEAR: Head and Neck Consensus Language for Ease and Reproducibility, a Multidisciplinary Consensus Mechanism for Head and Neck Pathology.
Ruta Gupta, Munita Bal, Justin A Bishop, Keith D Hunter, Kelly Magliocca, D Neil Hayes

Head Neck Pathol· September 2023

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Salivary Duct Carcinoma with Rhabdoid Features of the Parotid Gland with No E-Cadherin Expression: A Report with Anti-HER2 Therapy and Review of the Literature.
Richa Jain, E Ritter Sansoni, Jacqueline Angel, John P Gleysteen, D Neil Hayes

Dent J (Basel)· September 2023

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Unsupervised Hierarchical Clustering of Head and Neck Cancer Patients by Pre-Treatment Plasma Metabolomics Creates Prognostic Metabolic Subtypes.
Ronald C Eldridge, Zhaohui S Qin, Nabil F Saba, Madelyn C Houser, D Neil Hayes

Cancers (Basel)· June 2023

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Racial Differences in Androgen Receptor (AR) and AR Splice Variants (AR-SVs) Expression in Treatment-Naïve Androgen-Dependent Prostate Cancer.
Farhan Khan, Obianuju Mercy Anelo, Qandeel Sadiq, Wendy Effah, Gary Price, D Neil Hayes

Biomedicines· February 2023

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