Publications by authors named "Nevenka Dimitrova"

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SMAD4 induces opposite effects on metastatic growth from pancreatic tumors depending on the organ of residence.
Kaloyan M Tsanov, Francisco M Barriga, Yu-Jui Ho, Direna Alonso-Curbelo, Geulah Livshits, Nevenka Dimitrova

Nat Cancer· November 2025

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Differential Deep RNA Sequencing for Diagnostic Detection of Microbial Infections in Inflammatory Cardiomyopathy.
Weihua Huang, Changhong Yin, Patrick A Lento, Patricia V Adem, Nevenka Dimitrova

Circ Genom Precis Med· August 2024

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Metastatic site influences driver gene function in pancreatic cancer.
Kaloyan M Tsanov, Francisco M Barriga, Yu-Jui Ho, Direna Alonso-Curbelo, Geulah Livshits, Nevenka Dimitrova

bioRxiv· March 2024

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Profiling salivary miRNA expression levels in Fanconi anemia patients - a pilot study.
Kai Dun Tang, José M Amenábar, Juliana L Schussel, Cassius Carvalho Torres-Pereira, Carmem Bonfim, Nevenka Dimitrova

Odontology· January 2024

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The MHC Class II Antigen-Processing and Presentation Pathway Is Dysregulated in Type 1 Diabetes.
Ambroise Gilles, Lan Hu, Francesca Virdis, Derek B Sant'Angelo, Nevenka Dimitrova

J Immunol· December 2023

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Detecting salivary host and microbiome RNA signature for aiding diagnosis of oral and throat cancer.
Guruduth Banavar, Oyetunji Ogundijo, Cristina Julian, Ryan Toma, Francine Camacho, Nevenka Dimitrova

Oral Oncol· October 2023

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Ordered and deterministic cancer genome evolution after p53 loss.
Timour Baslan, John P Morris, Zhen Zhao, Jose Reyes, Yu-Jui Ho, Nevenka Dimitrova

Nature· August 2022

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The salivary metatranscriptome as an accurate diagnostic indicator of oral cancer.
Guruduth Banavar, Oyetunji Ogundijo, Ryan Toma, Sathyapriya Rajagopal, Yen Kai Lim, Nevenka Dimitrova

NPJ Genom Med· December 2021

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Novel insights into breast cancer copy number genetic heterogeneity revealed by single-cell genome sequencing.
Timour Baslan, Jude Kendall, Konstantin Volyanskyy, Katherine McNamara, Hilary Cox, Nevenka Dimitrova

Elife· May 2020

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Global Transcriptome Analysis Identifies a Diagnostic Signature for Early Disseminated Lyme Disease and Its Resolution.
Mary M Petzke, Konstantin Volyanskyy, Yong Mao, Byron Arevalo, Raphael Zohn, Nevenka Dimitrova

mBio· March 2020

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Integrated Genome-Wide Analysis of an Isogenic Pair of Clinical Isolates with Differential Antimicrobial Resistance to Ceftolozane/Tazobactam, Ceftazidime/Avibactam, and Piperacillin/Tazobactam.
Weihua Huang, Joelle El Hamouche, Guiqing Wang, Melissa Smith, Changhong Yin, Nevenka Dimitrova

Int J Mol Sci· February 2020

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Optimizing a Whole-Genome Sequencing Data Processing Pipeline for Precision Surveillance of Health Care-Associated Infections.
Weihua Huang, Guiqing Wang, Changhong Yin, Donald Chen, Abhay Dhand, Nevenka Dimitrova

Microorganisms· September 2019

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Evolution and mutations predisposing to daptomycin resistance in vancomycin-resistant Enterococcus faecium ST736 strains.
Guiqing Wang, Fan Yu, Henry Lin, Karthikeyan Murugesan, Weihua Huang, Nevenka Dimitrova

PLoS One· June 2019

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A Domain Knowledge-Enhanced LSTM-CRF Model for Disease Named Entity Recognition.
Yuan Ling, Sadid A Hasan, Oladimeji Farri, Zheng Chen, Rob van Ommering, Nevenka Dimitrova

AMIA Jt Summits Transl Sci Proc· May 2019

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Optimizing a Metatranscriptomic Next-Generation Sequencing Protocol for Bronchoalveolar Lavage Diagnostics.
Weihua Huang, Changhong Yin, Guiqing Wang, Jeremy Rosenblum, Sankaran Krishnan, Nevenka Dimitrova

J Mol Diagn· March 2019

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Complete Genome Sequences of Four Toxigenic Clinical Isolates from Patients of the Lower Hudson Valley, New York, USA.
Changhong Yin, Donald S Chen, Jian Zhuge, Donna McKenna, Joan Sagurton, Nevenka Dimitrova

Genome Announc· January 2018

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Complete Genome Sequence of a Colistin-Resistant Strain Harboring on an IncHI2 Plasmid in the United States.
Victoria L Gilrane, Stephen Lobo, Weihua Huang, Jian Zhuge, Changhong Yin, Nevenka Dimitrova

Genome Announc· October 2017

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Emergence and Evolution of Multidrug-Resistant Klebsiella pneumoniae with both and Integrated in the Chromosome.
Weihua Huang, Guiqing Wang, Robert Sebra, Jian Zhuge, Changhong Yin, Nevenka Dimitrova

Antimicrob Agents Chemother· July 2017

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Enterovirus D68 Subclade B3 Strain Circulating and Causing an Outbreak in the United States in 2016.
Guiqing Wang, Jian Zhuge, Weihua Huang, Sheila M Nolan, Victoria L Gilrane, Nevenka Dimitrova

Sci Rep· April 2017

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Guidelines for Developing and Reporting Machine Learning Predictive Models in Biomedical Research: A Multidisciplinary View.
Wei Luo, Dinh Phung, Truyen Tran, Sunil Gupta, Santu Rana, Nevenka Dimitrova

J Med Internet Res· December 2016

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Non-linear Bayesian framework to determine the transcriptional effects of cancer-associated genomic aberrations.
Abolfazl Razi, Nilanjana Banerjee, Nevenka Dimitrova, Vinay Varadan

Annu Int Conf IEEE Eng Med Biol Soc· September 2016

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Assessing next-generation sequencing and 4 bioinformatics tools for detection of Enterovirus D68 and other respiratory viruses in clinical samples.
Weihua Huang, Guiqing Wang, Henry Lin, Jian Zhuge, Sheila M Nolan, Nevenka Dimitrova

Diagn Microbiol Infect Dis· May 2016

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Brief-exposure to preoperative bevacizumab reveals a TGF-β signature predictive of response in HER2-negative breast cancers.
Vinay Varadan, Sitharthan Kamalakaran, Hannah Gilmore, Nilanjana Banerjee, Angel Janevski, Nevenka Dimitrova

Int J Cancer· February 2016

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Whole-Genome Sequence Analysis Reveals the Enterovirus D68 Isolates during the United States 2014 Outbreak Mainly Belong to a Novel Clade.
Weihua Huang, Guiqing Wang, Jian Zhuge, Sheila M Nolan, Nevenka Dimitrova

Sci Rep· October 2015

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Identification of a novel PARP14-TFE3 gene fusion from 10-year-old FFPE tissue by RNA-seq.
Weihua Huang, Michael Goldfischer, Sabina Babayeva, Yong Mao, Konstantin Volyanskyy, Nevenka Dimitrova

Genes Chromosomes Cancer· August 2015

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