Publications by authors named "Niall Haslam"

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DoReMi: context-based prioritization of linear motif matches.
Heiko Horn, Niall Haslam, Lars Juhl Jensen

PeerJ· April 2014

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SLiMScape: a protein short linear motif analysis plugin for Cytoscape.
Kevin T O'Brien, Niall J Haslam, Denis C Shields

BMC Bioinformatics· July 2013

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PeptideLocator: prediction of bioactive peptides in protein sequences.
Catherine Mooney, Niall J Haslam, Thérèse A Holton, Gianluca Pollastri, Denis C Shields

Bioinformatics· May 2013

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Towards the improved discovery and design of functional peptides: common features of diverse classes permit generalized prediction of bioactivity.
Catherine Mooney, Niall J Haslam, Gianluca Pollastri, Denis C Shields

PLoS One· April 2013

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Peptide-binding domains: are limp handshakes safest?
Niall J Haslam, Denis C Shields

Sci Signal· September 2012

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Profile-based short linear protein motif discovery.
Niall J Haslam, Denis C Shields

BMC Bioinformatics· May 2012

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Prediction of short linear protein binding regions.
Catherine Mooney, Gianluca Pollastri, Denis C Shields, Niall J Haslam

J Mol Biol· January 2012

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ELM--the database of eukaryotic linear motifs.
Holger Dinkel, Sushama Michael, Robert J Weatheritt, Norman E Davey, Kim Van Roey, Niall Haslam

Nucleic Acids Res· January 2012

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SLiMSearch 2.0: biological context for short linear motifs in proteins.
Norman E Davey, Niall J Haslam, Denis C Shields, Richard J Edwards

Nucleic Acids Res· July 2011

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EpiC: an open resource for exploring epitopes to aid antibody-based experiments.
Niall J Haslam, Toby J Gibson

J Proteome Res· July 2010

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SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs.
Norman E Davey, Niall J Haslam, Denis C Shields, Richard J Edwards

Nucleic Acids Res· July 2010

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Minimum information about a protein affinity reagent (MIAPAR).
Julie Bourbeillon, Sandra Orchard, Itai Benhar, Carl Borrebaeck, Antoine de Daruvar, Niall Haslam

Nat Biotechnol· July 2010

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A community standard format for the representation of protein affinity reagents.
David E Gloriam, Sandra Orchard, Daniela Bertinetti, Erik Björling, Erik Bongcam-Rudloff, Niall Haslam

Mol Cell Proteomics· January 2010

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ELM: the status of the 2010 eukaryotic linear motif resource.
Cathryn M Gould, Francesca Diella, Allegra Via, Pål Puntervoll, Christine Gemünd, Niall Haslam

Nucleic Acids Res· January 2010

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Thermal equivalence of DNA duplexes for probe design.
Gerald Weber, Niall Haslam, Jonathan W Essex, Cameron Neylon

J Phys Condens Matter· January 2009

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Optimal probe length varies for targets with high sequence variation: implications for probe library design for resequencing highly variable genes.
Niall J Haslam, Nava E Whiteford, Gerald Weber, Adam Prügel-Bennett, Jonathan W Essex

PLoS One· June 2008

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Understanding eukaryotic linear motifs and their role in cell signaling and regulation.
Francesca Diella, Niall Haslam, Claudia Chica, Aidan Budd, Sushama Michael

Front Biosci· May 2008

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An analysis of the feasibility of short read sequencing.
Nava Whiteford, Niall Haslam, Gerald Weber, Adam Prügel-Bennett, Jonathan W Essex

Nucleic Acids Res· November 2005

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