Publications by authors named "Gerald Weber"

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Weak-cooperative binding of a long single-stranded DNA chain on a surface.
Giovanni Nava, Thomas Carzaniga, Luca Casiraghi, Erik Bot, Giuliano Zanchetta, Gerald Weber

Nucleic Acids Res· August 2024

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Pseudouridine and 1-methylpseudouridine as potent nucleotide analogues for RNA therapy and vaccine development.
Lyana L Y Ho, Gabriel H A Schiess, Pâmella Miranda, Gerald Weber, Kira Astakhova

RSC Chem Biol· May 2024

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VarGibbs Usage in the Optimization of Nearest-Neighbor Parameters and Prediction of Melting Temperature of RNA Duplexes.
Izabela Ferreira, Gerald Weber

Methods Mol Biol· May 2024

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Nearest-neighbour parametrization of DNA single, double and triple mismatches at low sodium concentration.
Erik de Oliveira Martins, Gerald Weber

Biophys Chem· March 2024

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Cation valence dependence of hydrogen bond and stacking potentials in DNA mesoscopic models.
Maria Izabel Muniz, Adrian H Bustos, Sofie Slott, Kira Astakhova, Gerald Weber

Biophys Chem· March 2023

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Optimization and Clinical Validation of Colorimetric Reverse Transcription Loop-Mediated Isothermal Amplification, a Fast, Highly Sensitive and Specific COVID-19 Molecular Diagnostic Tool That Is Robust to Detect SARS-CoV-2 Variants of Concern.
Pedro A Alves, Ellen G de Oliveira, Ana Paula M Franco-Luiz, Letícia T Almeida, Amanda B Gonçalves, Gerald Weber

Front Microbiol· November 2021

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Complete Mesoscopic Parameterization of Single LNA Modifications in DNA Applied to Oncogene Probe Design.
Izabela Ferreira, Sofie Slott, Kira Astakhova, Gerald Weber

J Chem Inf Model· July 2021

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Thermodynamic evaluation of the impact of DNA mismatches in PCR-type SARS-CoV-2 primers and probes.
Pâmella Miranda, Gerald Weber

Mol Cell Probes· April 2021

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Salt dependent mesoscopic model for RNA at multiple strand concentrations.
Izabela Ferreira, Tauanne D Amarante, Gerald Weber

Biophys Chem· April 2021

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Optical and theoretical study of strand recognition by nucleic acid probes.
Ivana Domljanovic, Maria Taskova, Pâmella Miranda, Gerald Weber, Kira Astakhova

Commun Chem· August 2020

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Melting temperature measurement and mesoscopic evaluation of single, double and triple DNA mismatches.
Luciana M Oliveira, Adam S Long, Tom Brown, Keith R Fox, Gerald Weber

Chem Sci· July 2020

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Liquid-liquid phase separation and fibrillation of the prion protein modulated by a high-affinity DNA aptamer.
Carolina O Matos, Yulli M Passos, Mariana J do Amaral, Bruno Macedo, Matheus H Tempone, Gerald Weber

FASEB J· January 2020

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Nearest-neighbour parameters optimized for melting temperature prediction of DNA/RNA hybrids at high and low salt concentrations.
Vivianne Basílio Barbosa, Erik de Oliveira Martins, Gerald Weber

Biophys Chem· August 2019

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Replacing salt correction factors with optimized RNA nearest-neighbour enthalpy and entropy parameters.
Izabela Ferreira, Elizabeth A Jolley, Brent M Znosko, Gerald Weber

Chem Phys· May 2019

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Mesoscopic modelling of Cy3 and Cy5 dyes attached to DNA duplexes.
Pâmella Miranda, Luciana M Oliveira, Gerald Weber

Biophys Chem· November 2017

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An asymmetric mesoscopic model for single bulges in RNA.
Erik de Oliveira Martins, Gerald Weber

J Chem Phys· October 2017

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Effect of 3'UTR RET Variants on RET mRNA Secondary Structure and Disease Presentation in Medullary Thyroid Carcinoma.
Lucieli Ceolin, Mirian Romitti, Débora Rodrigues Siqueira, Carla Vaz Ferreira, Jessica Oliboni Scapineli, Gerald Weber

PLoS One· July 2016

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Evaluating Hydrogen Bonds and Base Stacking of Single, Tandem and Terminal GU Mismatches in RNA with a Mesoscopic Model.
Tauanne D Amarante, Gerald Weber

J Chem Inf Model· January 2016

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DNA terminal base pairs have weaker hydrogen bonds especially for AT under low salt concentration.
Izabela Ferreira, Tauanne D Amarante, Gerald Weber

J Chem Phys· November 2015

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Optimization method for obtaining nearest-neighbour DNA entropies and enthalpies directly from melting temperatures.
Gerald Weber

Bioinformatics· March 2015

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Comment on "SCS: signal, context, and structure features for genome-wide human promoter recognition".
Denise Fagundes-Lima, Gerald Weber

IEEE/ACM Trans Comput Biol Bioinform· March 2014

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TfReg: calculating DNA and RNA melting temperatures and opening profiles with mesoscopic models.
Gerald Weber

Bioinformatics· May 2013

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Mesoscopic model parametrization of hydrogen bonds and stacking interactions of RNA from melting temperatures.
Gerald Weber

Nucleic Acids Res· January 2013

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Origin of multiple periodicities in the Fourier power spectra of the Plasmodium falciparum genome.
Miriam C S Nunes, Elizabeth F Wanner, Gerald Weber

BMC Genomics· December 2011

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Thermal equivalence of DNA duplexes for probe design.
Gerald Weber, Niall Haslam, Jonathan W Essex, Cameron Neylon

J Phys Condens Matter· January 2009

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