Publications by authors named "Nicholas J Booher"

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ScanFold 2.0: a rapid approach for identifying potential structured RNA targets in genomes and transcriptomes.
Ryan J Andrews, Warren B Rouse, Collin A O'Leary, Nicholas J Booher, Walter N Moss

PeerJ· January 2023

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Expansion of the RNAStructuromeDB to include secondary structural data spanning the human protein-coding transcriptome.
Warren B Rouse, Collin A O'Leary, Nicholas J Booher, Walter N Moss

Sci Rep· August 2022

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Prediction and analysis of functional RNA structures within the integrative genomics viewer.
Warren B Rouse, Ryan J Andrews, Nicholas J Booher, Jibo Wang, Michael E Woodman

NAR Genom Bioinform· March 2022

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Complete Genome Sequencing and Targeted Mutagenesis Reveal Virulence Contributions of Tal2 and Tal4b of pv. undulosa ICMP11055 in Bacterial Leaf Streak of Wheat.
Nargues Falahi Charkhabi, Nicholas J Booher, Zhao Peng, Li Wang, Heshmat Rahimian

Front Microbiol· August 2017

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TAL effector driven induction of a SWEET gene confers susceptibility to bacterial blight of cotton.
Kevin L Cox, Fanhong Meng, Katherine E Wilkins, Fangjun Li, Ping Wang, Nicholas J Booher

Nat Commun· May 2017

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Effector Diversification Contributes to Xanthomonas oryzae pv. oryzae Phenotypic Adaptation in a Semi-Isolated Environment.
Ian Lorenzo Quibod, Alvaro Perez-Quintero, Nicholas J Booher, Gerbert S Dossa, Genelou Grande

Sci Rep· September 2016

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Online Tools for TALEN Design.
Adam J Bogdanove, Nicholas J Booher

Methods Mol Biol· July 2016

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Single molecule real-time sequencing of genomes reveals a dynamic structure and complex TAL (transcription activator-like) effector gene relationships.
Nicholas J Booher, Sara C D Carpenter, Robert P Sebra, Li Wang, Steven L Salzberg

Microb Genom· October 2015

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TAL effectors and activation of predicted host targets distinguish Asian from African strains of the rice pathogen Xanthomonas oryzae pv. oryzicola while strict conservation suggests universal importance of five TAL effectors.
Katherine E Wilkins, Nicholas J Booher, Li Wang, Adam J Bogdanove

Front Plant Sci· August 2015

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Tools for TAL effector design and target prediction.
Nicholas J Booher, Adam J Bogdanove

Methods· September 2014

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TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction.
Erin L Doyle, Nicholas J Booher, Daniel S Standage, Daniel F Voytas, Volker P Brendel

Nucleic Acids Res· July 2012

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