Publications by authors named "O Vavra"

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Caver Web 2.0: analysis of tunnels and ligand transport in dynamic ensembles of proteins.
Sérgio M Marques, Simeon Borko, Ondrej Vavra, Jan Dvorsky, Petr Kohout

Nucleic Acids Res· July 2025

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Large-scale annotation of biochemically relevant pockets and tunnels in cognate enzyme-ligand complexes.
O Vavra, J Tyzack, F Haddadi, J Stourac, J Damborsky

J Cheminform· October 2024

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ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era.
Anna Špačková, Ondřej Vávra, Tomáš Raček, Václav Bazgier, David Sehnal

Nucleic Acids Res· January 2024

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pyCaverDock: Python implementation of the popular tool for analysis of ligand transport with advanced caching and batch calculation support.
Ondrej Vavra, Jakub Beranek, Jan Stourac, Martin Surkovsky, Jiri Filipovic

Bioinformatics· August 2023

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Fast approximative methods for study of ligand transport and rational design of improved enzymes for biotechnologies.
Ondrej Vavra, Jiri Damborsky, David Bednar

Biotechnol Adv· November 2022

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