Publications by authors named "Okimasa Okada"

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Discovery of a potent, orally available furopyridine derivative as a novel selective bromodomain and extra-terminal domain (BET)-first bromodomain (BD1) inhibitor.
Shuichi Hagihara, Kouhei Ishizawa, Manami Kikuchi, Yuko Kawano, Akiko Nishidate, Okimasa Okada

Bioorg Med Chem Lett· September 2024

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Discovery of a potent orally available pyrazolopyridone derivative as a novel selective bromodomain and extra-terminal domain (BET)-first bromodomain (BD1) inhibitor.
Shuichi Hagihara, Kouhei Ishizawa, Kana Soga, Takashi Honjo, Shigeki Takai, Okimasa Okada

Bioorg Med Chem Lett· September 2024

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Generation of novel respiratory syncytial virus vaccine candidate antigens that can induce high levels of prefusion-specific antibodies.
Rima Matsuyama-Ito, Tomoharu Hogiri, Hiroyuki Kishida, Kei Takedomi, Okimasa Okada

J Biosci Bioeng· August 2024

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Force Field X: A computational microscope to study genetic variation and organic crystals using theory and experiment.
Rose A Gogal, Aaron J Nessler, Andrew C Thiel, Hernan V Bernabe, Rae A Corrigan Grove, Okimasa Okada

J Chem Phys· July 2024

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Crystal Polymorph Search in the Ensemble via a Deposition/Sublimation Alchemical Path.
Aaron J Nessler, Okimasa Okada, Yuya Kinoshita, Koki Nishimura, Hiroomi Nagata

Cryst Growth Des· April 2024

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Progressive alignment of crystals: reproducible and efficient assessment of crystal structure similarity.
Aaron J Nessler, Okimasa Okada, Mitchell J Hermon, Hiroomi Nagata, Michael J Schnieders

J Appl Crystallogr· December 2022

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A New Amino Acid for Improving Permeability and Solubility in Macrocyclic Peptides through Side Chain-to-Backbone Hydrogen Bonding.
Jaru Taechalertpaisarn, Satoshi Ono, Okimasa Okada, Timothy C Johnstone, R Scott Lokey

J Med Chem· March 2022

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Cyclosporin A: Conformational Complexity and Chameleonicity.
Satoshi Ono, Matthew R Naylor, Chad E Townsend, Chieko Okumura, Okimasa Okada

J Chem Inf Model· November 2021

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Identifying the Cellular Target of Cordyheptapeptide A and Synthetic Derivatives.
Victoria G Klein, Walter M Bray, Hao-Yuan Wang, Quinn Edmondson, Joshua Schwochert, Okimasa Okada

ACS Chem Biol· August 2021

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Drug-Like Properties in Macrocycles above MW 1000: Backbone Rigidity versus Side-Chain Lipophilicity.
Akihiro Furukawa, Joshua Schwochert, Cameron R Pye, Daigo Asano, Quinn D Edmondson, Okimasa Okada

Angew Chem Int Ed Engl· November 2020

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Pyrazolo[4,3-]pyrimidine Derivatives as a Novel Hypoxia-Inducible Factor Prolyl Hydroxylase Domain Inhibitor for the Treatment of Anemia.
Takashi Goi, Tatsuo Nakajima, Yoshiyuki Komatsu, Atsushi Kawata, Shuhei Yamakoshi, Okimasa Okada

ACS Med Chem Lett· July 2020

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Conformation and Permeability: Cyclic Hexapeptide Diastereomers.
Satoshi Ono, Matthew R Naylor, Chad E Townsend, Chieko Okumura, Okimasa Okada

J Chem Inf Model· June 2019

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Prediction of the binding affinity of compounds with diverse scaffolds by MP-CAFEE.
Okimasa Okada, Hiroshi Yamashita, Kei Takedomi, Satoshi Ono, Shinji Sunada

Biophys Chem· March 2014

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Molecular dynamics simulations for glutamate-binding and cleft-closing processes of the ligand-binding domain of GluR2.
Okimasa Okada, Kei Odai, Tohru Sugimoto, Etsuro Ito

Biophys Chem· March 2012

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Dynamic conformational changes due to the ATP hydrolysis in the motor domain of myosin: 10-ns molecular dynamics simulations.
Tatsuyuki Kawakubo, Okimasa Okada, Tomoyuki Minami

Biophys Chem· April 2009

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Roles of conserved basic amino acid residues and activation mechanism of the hyperthermophilic aspartate racemase at high temperature.
Takumitsu Yoshida, Tomohiro Seko, Okimasa Okada, Kousuke Iwata, Lijun Liu

Proteins· August 2006

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Molecular dynamics simulations of evolved collective motions of atoms in the myosin motor domain upon perturbation of the ATPase pocket.
Tatsuyuki Kawakubo, Okimasa Okada, Tomoyuki Minami

Biophys Chem· May 2005

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