Publications by authors named "Oliver Pybus"

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An integrated One Health initiative for pathogen genomic surveillance in the UK.
Yogesh K Gupta, Ian Adams, Ronny van Aerle, Justin Avant, David Bass, Oliver G Pybus

Microb Genom· November 2025

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Quantifying viral load and characterizing virus diversity in wildlife samples with target enrichment sequencing.
Laura Bergner, Stefano Catalano, Jenna Nichols, Ana Da Silva Felipe, Xiaofei Cao, Oliver G Pybus

Microb Genom· September 2025

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Comparative performance of viral landscape phylogeography approaches.
Simon Dellicour, Fabiana Gámbaro, Maude Jacquot, Sebastian Lequime, Guy Baele, Oliver G Pybus

Proc Natl Acad Sci U S A· July 2025

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Estimating epidemic dynamics with genomic and time series data.
Alexander E Zarebski, Antoine Zwaans, Bernardo Gutierrez, Louis du Plessis, Oliver G Pybus

J R Soc Interface· June 2025

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Comparative performance of novel viral landscape phylogeography approaches.
Simon Dellicour, Fabiana Gámbaro, Maude Jacquot, Sebastian Lequime, Guy Baele, Oliver G Pybus

bioRxiv· March 2025

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Artificial intelligence for modelling infectious disease epidemics.
Moritz U G Kraemer, Joseph L-H Tsui, Serina Y Chang, Spyros Lytras, Mark P Khurana, Oliver G Pybus

Nature· February 2025

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Anthropogenic land consolidation intensifies zoonotic host diversity loss and disease transmission in human habitats.
Shan Pei, Pengbo Yu, Jayna Raghwani, Yuxin Wang, Ziyan Liu, Oliver G Pybus

Nat Ecol Evol· January 2025

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Association of poultry vaccination with interspecies transmission and molecular evolution of H5 subtype avian influenza virus.
Bingying Li, Jayna Raghwani, Sarah C Hill, Sarah François, Noémie Lefrancq, Oliver G Pybus

Sci Adv· January 2025

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Toward optimal disease surveillance with graph-based active learning.
Joseph L-H Tsui, Mengyan Zhang, Prathyush Sambaturu, Simon Busch-Moreno, Marc A Suchard, Oliver G Pybus

Proc Natl Acad Sci U S A· December 2024

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COVID-19 pandemic interventions reshaped the global dispersal of seasonal influenza viruses.
Zhiyuan Chen, Joseph L-H Tsui, Bernardo Gutierrez, Simon Busch Moreno, Louis du Plessis, Oliver G Pybus

Science· November 2024

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Routes of importation and spatial dynamics of SARS-CoV-2 variants during localized interventions in Chile.
Bernardo Gutierrez, Joseph L-H Tsui, Giulia Pullano, Mattia Mazzoli, Karthik Gangavarapu, Oliver G Pybus

PNAS Nexus· November 2024

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Serological evidence of sarbecovirus exposure along Sunda pangolin trafficking pathways.
Brian M Worthington, Portia Y-H Wong, Kishoree K Kumaree, Tracey-Leigh Prigge, Kar Hon Ng, Oliver G Pybus

BMC Biol· November 2024

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Spatial scales of COVID-19 transmission in Mexico.
Brennan Klein, Harrison Hartle, Munik Shrestha, Ana Cecilia Zenteno, David Barros Sierra Cordera, Oliver G Pybus

PNAS Nexus· September 2024

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Phylodynamic analysis of foot-and-mouth disease virus evolution in Mar Chiquita, Argentina.
Laura C Lozano Calderón, Gustavo S Cabanne, Andrea Marcos, Sabrina Galdo Novo, Carolina Torres, Oliver G Pybus

Arch Virol· April 2024

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Characterization of the genomic sequence of a circo-like virus and of three chaphamaparvoviruses detected in mute swan ().
Sarah François, Sarah C Hill, Christopher M Perrins, Oliver G Pybus

Microbiol Resour Announc· March 2024

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Synchrony of Bird Migration with Global Dispersal of Avian Influenza Reveals Exposed Bird Orders.
Qiqi Yang, Ben Wang, Phillipe Lemey, Lu Dong, Tong Mu, Oliver G Pybus

Nat Commun· February 2024

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Ancient chicken remains reveal the origins of virulence in Marek's disease virus.
Steven R Fiddaman, Evangelos A Dimopoulos, Ophélie Lebrasseur, Louis du Plessis, Bram Vrancken, Oliver G Pybus

Science· December 2023

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SARS-CoV-2 evolution in the Omicron era.
Cornelius Roemer, Daniel J Sheward, Ryan Hisner, Federico Gueli, Hitoshi Sakaguchi, Oliver G Pybus

Nat Microbiol· November 2023

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Convergent trends and spatiotemporal patterns of Aedes-borne arboviruses in Mexico and Central America.
Bernardo Gutierrez, Darlan da Silva Candido, Sumali Bajaj, Abril Paulina Rodriguez Maldonado, Fabiola Garces Ayala, Oliver G Pybus

PLoS Negl Trop Dis· September 2023

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Correction: Implementation of Genomic Surveillance of SARS-CoV-2 in the Caribbean: Lessons learned for sustainability in resource-limited settings.
Nikita S D Sahadeo, Soren Nicholls, Filipe R R Moreira, Áine O'Toole, Vernie Ramkissoon, Oliver G Pybus

PLOS Glob Public Health· September 2023

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Genetic diversity, recombination and cross-species transmission of a waterbird gammacoronavirus in the wild.
Sarah François, Salik Nazki, Stephen H Vickers, Guillaume Fournié, Christopher M Perrins, Oliver G Pybus

J Gen Virol· August 2023

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Dispersal patterns and influence of air travel during the global expansion of SARS-CoV-2 variants of concern.
Houriiyah Tegally, Eduan Wilkinson, Joseph L-H Tsui, Monika Moir, Darren Martin, Oliver G Pybus

Cell· July 2023

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Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1.
Joseph L-H Tsui, John T McCrone, Ben Lambert, Sumali Bajaj, Rhys P D Inward, Oliver G Pybus

Science· July 2023

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Comparing the evolutionary dynamics of predominant SARS-CoV-2 virus lineages co-circulating in Mexico.
Hugo G Castelán-Sánchez, Luis Delaye, Rhys P D Inward, Simon Dellicour, Bernardo Gutierrez, Oliver G Pybus

Elife· July 2023

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Identification of Evolutionary Trajectories Shared across Human Betacoronaviruses.
Marina Escalera-Zamudio, Sergei L Kosakovsky Pond, Natalia Martínez de la Viña, Bernardo Gutiérrez, Rhys P D Inward, Oliver G Pybus

Genome Biol Evol· June 2023

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