Publications by authors named "Omar N A Demerdash"

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Allosteric Prediction via Convolutional Neural Networks and Protein Structural and Dynamical Features.
T Rajitha Rajeshwar, John H Lagergren, Jeremy C Smith, Omar N A Demerdash

Biophys J· December 2025

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TCR-H: explainable machine learning prediction of T-cell receptor epitope binding on unseen datasets.
Rajitha Rajeshwar T, Omar N A Demerdash, Jeremy C Smith

Front Immunol· September 2024

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Exploring the role of plant lysin motif receptor-like kinases in regulating plant-microbe interactions in the bioenergy crop .
Kevin R Cope, Erica T Prates, John I Miller, Omar N A Demerdash, Manesh Shah

Comput Struct Biotechnol J· December 2022

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Using diverse potentials and scoring functions for the development of improved machine-learned models for protein-ligand affinity and docking pose prediction.
Omar N A Demerdash

J Comput Aided Mol Des· November 2021

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Data-driven models for protein interaction and design.
Xiaolei Zhu, Spencer S Ericksen, Omar N A Demerdash, Julie C Mitchell

Proteins· December 2013

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Using physical potentials and learned models to distinguish native binding interfaces from de novo designed interfaces that do not bind.
Omar N A Demerdash, Julie C Mitchell

Proteins· November 2013

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Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.
Rocco Moretti, Sarel J Fleishman, Rudi Agius, Mieczyslaw Torchala, Paul A Bates, Omar N A Demerdash

Proteins· November 2013

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Density-cluster NMA: A new protein decomposition technique for coarse-grained normal mode analysis.
Omar N A Demerdash, Julie C Mitchell

Proteins· July 2012

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Community-wide assessment of protein-interface modeling suggests improvements to design methodology.
Sarel J Fleishman, Timothy A Whitehead, Eva-Maria Strauch, Jacob E Corn, Sanbo Qin, Omar N A Demerdash

J Mol Biol· November 2011

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Expression of nestin by neural cells in the adult rat and human brain.
Michael L Hendrickson, Abigail J Rao, Omar N A Demerdash, Ronald E Kalil

PLoS One· April 2011

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ReplicOpter: a replicate optimizer for flexible docking.
Omar N A Demerdash, Amanda Buyan, Julie C Mitchell

Proteins· November 2010

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Structure-based predictive models for allosteric hot spots.
Omar N A Demerdash, Michael D Daily, Julie C Mitchell

PLoS Comput Biol· October 2009

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