Publications by authors named "Padraig Cunningham"

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ActBeCalf: Accelerometer-based multivariate time-series dataset for calf behavior classification.
Oshana Iddi Dissanayake, Sarah E McPherson, Joseph Allyndrée, Emer Kennedy, Pádraig Cunningham

Data Brief· June 2025

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An empirical evaluation of kernels for time series.
Mourtadha Badiane, Pádraig Cunningham

Artif Intell Rev· July 2021

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Derivation of Candidate Clinical Decision Rules to Identify Infants at Risk for Central Apnea.
Paul Walsh, Pádraig Cunningham, Sabrina Merchant, Nicholas Walker, Jacquelyn Heffner

Pediatrics· November 2015

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All or nothing: protein complexes flip essentiality between distantly related eukaryotes.
Colm J Ryan, Nevan J Krogan, Pádraig Cunningham, Gerard Cagney

Genome Biol Evol· December 2013

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Hierarchical modularity and the evolution of genetic interactomes across species.
Colm J Ryan, Assen Roguev, Kristin Patrick, Jiewei Xu, Harlizawati Jahari, Pádraig Cunningham

Mol Cell· June 2012

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Ensemble based system for whole-slide prostate cancer probability mapping using color texture features.
Matthew D DiFranco, Gillian O'Hurley, Elaine W Kay, R William G Watson, Padraig Cunningham

Comput Med Imaging Graph· January 2012

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Imputing and predicting quantitative genetic interactions in epistatic MAPs.
Colm Ryan, Gerard Cagney, Nevan Krogan, Pádraig Cunningham, Derek Greene

Methods Mol Biol· January 2012

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Improved functional overview of protein complexes using inferred epistatic relationships.
Colm Ryan, Derek Greene, Aude Guénolé, Haico van Attikum, Nevan J Krogan, Pádraig Cunningham

BMC Syst Biol· May 2011

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Ensemble approach combining multiple methods improves human transcription start site prediction.
David G Dineen, Markus Schröder, Desmond G Higgins, Pádraig Cunningham

BMC Genomics· November 2010

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Missing value imputation for epistatic MAPs.
Colm Ryan, Derek Greene, Gerard Cagney, Pádraig Cunningham

BMC Bioinformatics· April 2010

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High DNA melting temperature predicts transcription start site location in human and mouse.
David G Dineen, Andreas Wilm, Pádraig Cunningham, Desmond G Higgins

Nucleic Acids Res· December 2009

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MetaFIND: a feature analysis tool for metabolomics data.
Kenneth Bryan, Lorraine Brennan, Pádraig Cunningham

BMC Bioinformatics· November 2008

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Extending bicluster analysis to annotate unclassified ORFs and predict novel functional modules using expression data.
Kenneth Bryan, Pádraig Cunningham

BMC Genomics· September 2008

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Ensemble non-negative matrix factorization methods for clustering protein-protein interactions.
Derek Greene, Gerard Cagney, Nevan Krogan, Pádraig Cunningham

Bioinformatics· August 2008

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Comparison of the evaluations of a case-based reasoning decision support tool by specialist expert reviewers with those of end users.
Paul Walsh, Donal Doyle, Kemedy K McQuillen, Joshua Bigler, Caleb Thompson, Padraig Cunningham

West J Emerg Med· May 2008

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cluML: A markup language for clustering and cluster validity assessment of microarray data.
Nadia Bolshakova, Pádraig Cunningham

Appl Bioinformatics· December 2006

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Application of simulated annealing to the biclustering of gene expression data.
Kenneth Bryan, Pádraig Cunningham, Nadia Bolshakova

IEEE Trans Inf Technol Biomed· July 2006

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A knowledge-driven approach to cluster validity assessment.
Nadia Bolshakova, Francisco Azuaje, Pádraig Cunningham

Bioinformatics· May 2005

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An integrated tool for microarray data clustering and cluster validity assessment.
Nadia Bolshakova, Francisco Azuaje, Pádraig Cunningham

Bioinformatics· February 2005

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An artificial neural network ensemble to predict disposition and length of stay in children presenting with bronchiolitis.
Paul Walsh, Padraig Cunningham, Stephen J Rothenberg, Sinead O'Doherty, Hilary Hoey

Eur J Emerg Med· October 2004

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Explaining the output of ensembles in medical decision support on a case by case basis.
Robert Wall, Pádraig Cunningham, Paul Walsh, Stephen Byrne

Artif Intell Med· June 2003

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