Publications by authors named "Panjun Kim"

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Hi-C sequencing data from frontal cortex of laboratory rats.
Panjun Kim, Rachel R Ward, Burt M Sharp, Robert W Williams, Hao Chen

Sci Data· December 2025

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Hi-C sequencing data from cortex of laboratory rats.
Panjun Kim, Rachel R Ward, Burt M Sharp, Robert W Williams, Hao Chen

bioRxiv· February 2025

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Enlightening the blind spot of the Michaelis-Menten rate law: The role of relaxation dynamics in molecular complex formation.
Junghun Chae, Roktaek Lim, Thomas L P Martin, Cheol-Min Ghim, Pan-Jun Kim

J Theor Biol· January 2025

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A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats.
Tristan V de Jong, Yanchao Pan, Pasi Rastas, Daniel Munro, Monika Tutaj, Panjun Kim

Cell Genom· April 2024

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Inactivation of phosphodiesterase-4B gene in rat nucleus accumbens shell by CRISPR/Cas9 or positive allosteric modulation of the protein affects the motivation to chronically self-administer nicotine.
Burt M Sharp, Qin Jiang, Panjun Kim, Hao Chen

Sci Rep· January 2024

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Generalized Michaelis-Menten rate law with time-varying molecular concentrations.
Roktaek Lim, Thomas L P Martin, Junghun Chae, Woo Joong Kim, Cheol-Min Ghim, Pan-Jun Kim

PLoS Comput Biol· December 2023

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A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats.
Tristan V de Jong, Yanchao Pan, Pasi Rastas, Daniel Munro, Monika Tutaj, Panjun Kim

bioRxiv· September 2023

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Inactivation of phosphodiesterase-4B gene in rat nucleus accumbens shell by CRISPR/Cas9 modulates the motivation to chronically self-administer nicotine.
Burt M Sharp, Qin Jiang, Panjun Kim, Hao Chen

bioRxiv· July 2023

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Backward simulation for inferring hidden biomolecular kinetic profiles.
Junghun Chae, Roktaek Lim, Cheol-Min Ghim, Pan-Jun Kim

STAR Protoc· December 2021

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Whole genome sequencing of nearly isogenic WMI and WLI inbred rats identifies genes potentially involved in depression and stress reactivity.
Tristan V de Jong, Panjun Kim, Victor Guryev, Megan K Mulligan, Robert W Williams

Sci Rep· July 2021

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Cost-effective circadian mechanism: rhythmic degradation of circadian proteins spontaneously emerges without rhythmic post-translational regulation.
Roktaek Lim, Junghun Chae, David E Somers, Cheol-Min Ghim, Pan-Jun Kim

iScience· July 2021

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Publisher Correction: Large-scale metabolic interaction network of the mouse and human gut microbiota.
Roktaek Lim, Josephine Jill T Cabatbat, Thomas L P Martin, Haneul Kim, Seunghyeon Kim, Pan-Jun Kim

Sci Data· August 2020

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Large-scale metabolic interaction network of the mouse and human gut microbiota.
Roktaek Lim, Josephine Jill T Cabatbat, Thomas L P Martin, Haneul Kim, Seunghyeon Kim, Pan-Jun Kim

Sci Data· June 2020

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Waveforms of molecular oscillations reveal circadian timekeeping mechanisms.
Hang-Hyun Jo, Yeon Jeong Kim, Jae Kyoung Kim, Mathias Foo, David E Somers, Pan-Jun Kim

Commun Biol· November 2018

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Nutritionally recommended food for semi- to strict vegetarian diets based on large-scale nutrient composition data.
Seunghyeon Kim, Michael F Fenech, Pan-Jun Kim

Sci Rep· March 2018

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Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis.
Jaeyun Sung, Seunghyeon Kim, Josephine Jill T Cabatbat, Sungho Jang, Yong-Su Jin, Pan-Jun Kim

Nat Commun· June 2017

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Metabolic modeling with Big Data and the gut microbiome.
Jaeyun Sung, Vanessa Hale, Annette C Merkel, Pan-Jun Kim, Nicholas Chia

Appl Transl Genom· September 2016

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Inverse correlation between longevity and developmental rate among wild C. elegans strains.
Yujin Lee, Wooseon Hwang, Juyoung Jung, Sangsoon Park, Josephine Jill T Cabatbat, Pan-Jun Kim

Aging (Albany NY)· May 2016

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Fumarate-Mediated Persistence of Escherichia coli against Antibiotics.
Jun-Seob Kim, Da-Hyeong Cho, Paul Heo, Suk-Chae Jung, Myungseo Park, Pan-Jun Kim

Antimicrob Agents Chemother· April 2016

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Uncovering the nutritional landscape of food.
Seunghyeon Kim, Jaeyun Sung, Mathias Foo, Yong-Su Jin, Pan-Jun Kim

PLoS One· March 2016

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Kernel Architecture of the Genetic Circuitry of the Arabidopsis Circadian System.
Mathias Foo, David E Somers, Pan-Jun Kim

PLoS Comput Biol· February 2016

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Anatomy of scientific evolution.
Jinhyuk Yun, Pan-Jun Kim, Hawoong Jeong

PLoS One· January 2016

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Enhanced hexose fermentation by Saccharomyces cerevisiae through integration of stoichiometric modeling and genetic screening.
Josh Quarterman, Soo Rin Kim, Pan-Jun Kim, Yong-Su Jin

J Biotechnol· January 2015

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Halomonas sulfidaeris-dominated microbial community inhabits a 1.8 km-deep subsurface Cambrian Sandstone reservoir.
Yiran Dong, Charu Gupta Kumar, Nicholas Chia, Pan-Jun Kim, Philip A Miller

Environ Microbiol· June 2014

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Multi-study integration of brain cancer transcriptomes reveals organ-level molecular signatures.
Jaeyun Sung, Pan-Jun Kim, Shuyi Ma, Cory C Funk, Andrew T Magis

PLoS Comput Biol· February 2014

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