Publications by authors named "Pascal Hingamp"

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The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes.
Caroline Vernette, Julien Lecubin, Pablo Sánchez, , Shinichi Sunagawa, Pascal Hingamp

Nucleic Acids Res· July 2022

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Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome.
Ahmed A Zayed, James M Wainaina, Guillermo Dominguez-Huerta, Eric Pelletier, Jiarong Guo, Pascal Hingamp

Science· April 2022

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The Ocean barcode atlas: A web service to explore the biodiversity and biogeography of marine organisms.
Caroline Vernette, Nicolas Henry, Julien Lecubin, Colomban de Vargas, Pascal Hingamp

Mol Ecol Resour· May 2021

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Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities.
Silvia G Acinas, Pablo Sánchez, Guillem Salazar, Francisco M Cornejo-Castillo, Marta Sebastián, Pascal Hingamp

Commun Biol· May 2021

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Diversity and evolution of bacterial bioluminescence genes in the global ocean.
Thomas Vannier, Pascal Hingamp, Floriane Turrel, Lisa Tanet, Magali Lescot

NAR Genom Bioinform· June 2020

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Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome.
Guillem Salazar, Lucas Paoli, Adriana Alberti, Jaime Huerta-Cepas, Hans-Joachim Ruscheweyh, Pascal Hingamp

Cell· November 2019

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Microbial abundance, activity and population genomic profiling with mOTUs2.
Alessio Milanese, Daniel R Mende, Lucas Paoli, Guillem Salazar, Hans-Joachim Ruscheweyh, Pascal Hingamp

Nat Commun· March 2019

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Minimum Information about an Uncultivated Virus Genome (MIUViG).
Simon Roux, Evelien M Adriaenssens, Bas E Dutilh, Eugene V Koonin, Andrew M Kropinski, Pascal Hingamp

Nat Biotechnol· January 2019

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Correction: Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan.
Takashi Yoshida, Yosuke Nishimura, Hiroyasu Watai, Nana Haruki, Daichi Morimoto, Pascal Hingamp

ISME J· December 2018

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Degenerate PCR Primers to Reveal the Diversity of Giant Viruses in Coastal Waters.
Yanze Li, Pascal Hingamp, Hiroyasu Watai, Hisashi Endo, Takashi Yoshida

Viruses· September 2018

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The Ocean Gene Atlas: exploring the biogeography of plankton genes online.
Emilie Villar, Thomas Vannier, Caroline Vernette, Magali Lescot, Miguelangel Cuenca, Pascal Hingamp

Nucleic Acids Res· July 2018

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Taxon Richness of "Megaviridae" Exceeds those of Bacteria and Archaea in the Ocean.
Tomoko Mihara, Hitoshi Koyano, Pascal Hingamp, Nigel Grimsley, Susumu Goto

Microbes Environ· July 2018

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Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan.
Takashi Yoshida, Yosuke Nishimura, Hiroyasu Watai, Nana Haruki, Daichi Morimoto, Pascal Hingamp

ISME J· May 2018

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Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans.
Yoann Seeleuthner, Samuel Mondy, Vincent Lombard, Quentin Carradec, Eric Pelletier, Pascal Hingamp

Nat Commun· January 2018

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A global ocean atlas of eukaryotic genes.
Quentin Carradec, Eric Pelletier, Corinne Da Silva, Adriana Alberti, Yoann Seeleuthner, Pascal Hingamp

Nat Commun· January 2018

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Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean.
Yosuke Nishimura, Hiroyasu Watai, Takashi Honda, Tomoko Mihara, Kimiho Omae, Pascal Hingamp

mSphere· March 2017

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Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages.
Magali Lescot, Pascal Hingamp, Kenji K Kojima, Emilie Villar, Sarah Romac

ISME J· May 2016

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Plankton networks driving carbon export in the oligotrophic ocean.
Lionel Guidi, Samuel Chaffron, Lucie Bittner, Damien Eveillard, Abdelhalim Larhlimi, Pascal Hingamp

Nature· April 2016

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Linking Virus Genomes with Host Taxonomy.
Tomoko Mihara, Yosuke Nishimura, Yugo Shimizu, Hiroki Nishiyama, Genki Yoshikawa, Pascal Hingamp

Viruses· March 2016

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Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton.
Francisco M Cornejo-Castillo, Ana M Cabello, Guillem Salazar, Patricia Sánchez-Baracaldo, Gipsi Lima-Mendez, Pascal Hingamp

Nat Commun· March 2016

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Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes.
Camille Clerissi, Yves Desdevises, Sarah Romac, Stéphane Audic, Colomban de Vargas, Pascal Hingamp

Environ Microbiol Rep· December 2015

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Ocean plankton. Structure and function of the global ocean microbiome.
Shinichi Sunagawa, Luis Pedro Coelho, Samuel Chaffron, Jens Roat Kultima, Karine Labadie, Pascal Hingamp

Science· May 2015

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Ocean plankton. Environmental characteristics of Agulhas rings affect interocean plankton transport.
Emilie Villar, Gregory K Farrant, Michael Follows, Laurence Garczarek, Sabrina Speich, Pascal Hingamp

Science· May 2015

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Ocean plankton. Patterns and ecological drivers of ocean viral communities.
Jennifer R Brum, J Cesar Ignacio-Espinoza, Simon Roux, Guilhem Doulcier, Silvia G Acinas, Pascal Hingamp

Science· May 2015

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Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean.
Colomban de Vargas, Stéphane Audic, Nicolas Henry, Johan Decelle, Frédéric Mahé, Pascal Hingamp

Science· May 2015

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