Publications by authors named "Patrick Chain"

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STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies.
Julia M Kelliher, Chloe Mirzayi, Sarah R Bordenstein, Aaron Oliver, Christina A Kellogg, Patrick S G Chain

Nat Microbiol· December 2025

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Aerosol biome of a cafeteria and medical facility in Los Alamos, New Mexico, USA.
Andreas Martinez, Nelson Ruth, Andrew Hatch, Patrick Chain, Migun Shakya

Microbiol Resour Announc· October 2025

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Detection of electrical signals in fungal mycelia in response to external stimuli.
Matteo Buffi, Silvia Giangaspero, Valerio Foiada, Loïc Puthod, Guillaume Cailleau, Patrick S G Chain

iScience· October 2025

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Pangeneric analyses reveal the divergent genome evolution and ecologies between morels and truffles in the Morchellaceae.
Gregory Bonito, Shingo Miyauchi, Richard D Hayes, Hao Tan, Alan Kuo, Patrick Chain

Curr Biol· September 2025

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Microbiome data management in action workshop: Atlanta, GA, USA, June 12-13, 2024.
Julia M Kelliher, Mashael Aljumaah, Sarah R Bordenstein, J Rodney Brister, Patrick S G Chain

Environ Microbiome· April 2025

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Impact of Oxalic Acid Consumption and pH on the In Vitro Biological Control of Oxalogenic Phytopathogen .
Aislinn Estoppey, Armelle Vallat-Michel, Patrick S Chain, Saskia Bindschedler, Pilar Junier

J Fungi (Basel)· March 2025

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Characterisation and comparative analysis of mitochondrial genomes of false, yellow, black and blushing morels provide insights on their structure and evolution.
Gang Tao, Steven Ahrendt, Shingo Miyauchi, XiaoJie Zhu, Hao Peng, Patrick S G Chain

IMA Fungus· February 2025

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Investigating Bacterial-Fungal Interactions using Fungal Highway Columns in Diverse Environments and Substrates.
Julia M Kelliher, Leah Y D Johnson, Aaron J Robinson, Ilona Palmieri, Buck T Hanson, Patrick S G Chain

J Vis Exp· January 2025

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Electrical signaling in fungi: past and present challenges.
Matteo Buffi, Julia M Kelliher, Aaron J Robinson, Diego Gonzalez, Guillaume Cailleau, Patrick S G Chain

FEMS Microbiol Rev· January 2025

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Erratum for Longley et al., "Signatures of Mollicutes-related endobacteria in publicly available Mucoromycota genomes".
Reid Longley, Aaron J Robinson, Olivia A Asher, Earl Middlebrook, Gregory Bonito, Patrick S G Chain

mSphere· December 2024

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Standardized and accessible multi-omics bioinformatics workflows through the NMDC EDGE resource.
Julia M Kelliher, Yan Xu, Mark C Flynn, Michal Babinski, Shane Canon, Patrick S G Chain

Comput Struct Biotechnol J· December 2024

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A new species of true morel from Switzerland: , sp. nov.
Melissa Cravero, Gregory Bonito, Patrick S Chain, Saskia Bindschedler, Pilar Junier

Mycologia· November 2024

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Signatures of Mollicutes-related endobacteria in publicly available Mucoromycota genomes.
Reid Longley, Aaron J Robinson, Olivia A Asher, Earl Middlebrook, Gregory Bonito, Patrick S G Chain

mSphere· September 2024

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Identification of mobile genetic elements with geNomad.
Antonio Pedro Camargo, Simon Roux, Frederik Schulz, Michal Babinski, Yan Xu, Patrick S G Chain

Nat Biotechnol· August 2024

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Fabricated devices for performing bacterial-fungal interaction experiments across scales.
Julia M Kelliher, Leah Y D Johnson, Aaron J Robinson, Reid Longley, Buck T Hanson, Patrick S G Chain

Front Microbiol· August 2024

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A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics.
Emiley A Eloe-Fadrosh, Christopher J Mungall, Mark Andrew Miller, Montana Smith, Sujay Sanjeev Patil, Patrick S G Chain

Methods Mol Biol· May 2024

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The complete genome sequence of probiotic ATCC 9224 isolated from sour milk.
Anand Kumar, Manmeet Rawat, Yuliya A Kunde, Karen W Davenport, Rana Al-Sadi, Patrick Sam Guy Chain

Microbiol Resour Announc· April 2024

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Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows.
Ryan Connor, Migun Shakya, David A Yarmosh, Wolfgang Maier, Ross Martin, Patrick S G Chain

Viruses· March 2024

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Host and nonhost bacteria support bacteriophage dissemination along mycelia and abiotic dispersal networks.
Claire Périat, Thierry Kuhn, Matteo Buffi, Andrea Corona-Ramirez, Mathilda Fatton, Patrick S Chain

Microlife· February 2024

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Combining compositional data sets introduces error in covariance network reconstruction.
James D Brunner, Aaron J Robinson, Patrick S G Chain

ISME Commun· January 2024

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Bridging Place-Based Astrobiology Education with Genomics, Including Descriptions of Three Novel Bacterial Species Isolated from Mars Analog Sites of Cultural Relevance.
Rebecca D Prescott, Yvonne L Chan, Eric J Tong, Fiona Bunn, Chiyoko T Onouye, Patrick S G Chain

Astrobiology· December 2023

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Associated bacterial communities, confrontation studies, and comparative genomics reveal important interactions between with spp.
Guillaume Cailleau, Buck T Hanson, Melissa Cravero, Sami Zhioua, Patrick Hilpish, Patrick S G Chain

Front Fungal Biol· December 2023

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Genomic and Phenotypic Characterization of Shiga Toxin-Producing Strains Isolated from Wild Birds in a Major Agricultural Region in California.
Michelle Qiu Carter, Beatriz Quiñones, Xiaohua He, Antares Pham, Diana Carychao, Patrick S G Chain

Microorganisms· November 2023

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Fungal drops: a novel approach for macro- and microscopic analyses of fungal mycelial growth.
Matteo Buffi, Guillaume Cailleau, Thierry Kuhn, Xiang-Yi Li Richter, Claire E Stanley, Patrick S Chain

Microlife· October 2023

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Metabolic versatility of from geothermal features of Hawai'i and Chile as revealed by five metagenome-assembled genomes.
Manolya Gul Balbay, Maximillian D Shlafstein, Charles Cockell, Sherry L Cady, Rebecca D Prescott, Patrick S G Chain

Front Microbiol· September 2023

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