Publications by authors named "Patrick Deschavanne"

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BactPepDB: a database of predicted peptides from a exhaustive survey of complete prokaryote genomes.
Julien Rey, Patrick Deschavanne, Pierre Tuffery

Database (Oxford)· February 2015

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Edmond-Philippe Malaise (1930-2013): a lifetime of perseverance leads to the cellular definition of intrinsic radiosensitivity.
Nicolas Foray, Christophe Badie, Ghazi Alsbeih, Philippe Lambin, Fady Geara, Patrick Deschavanne

Int J Radiat Oncol Biol Phys· April 2014

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GOHTAM: a website for 'Genomic Origin of Horizontal Transfers, Alignment and Metagenomics'.
Sabine Ménigaud, Ludovic Mallet, Géraldine Picord, Cécile Churlaud, Alexandre Borrel, Patrick Deschavanne

Bioinformatics· May 2012

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The use of genomic signature distance between bacteriophages and their hosts displays evolutionary relationships and phage growth cycle determination.
Patrick Deschavanne, Michael S DuBow, Christophe Regeard

Virol J· July 2010

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A benchmark of parametric methods for horizontal transfers detection.
Jennifer Becq, Cécile Churlaud, Patrick Deschavanne

PLoS One· April 2010

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Whole genome evaluation of horizontal transfers in the pathogenic fungus Aspergillus fumigatus.
Ludovic V Mallet, Jennifer Becq, Patrick Deschavanne

BMC Genomics· March 2010

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Enhanced protein fold recognition using a structural alphabet.
Patrick Deschavanne, Pierre Tufféry

Proteins· July 2009

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Horizontally acquired genomic islands in the tubercle bacilli.
Jichan Jang, Jennifer Becq, Brigitte Gicquel, Patrick Deschavanne, Olivier Neyrolles

Trends Microbiol· July 2008

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Contribution of horizontally acquired genomic islands to the evolution of the tubercle bacilli.
Jennifer Becq, Maria Cristina Gutierrez, Vania Rosas-Magallanes, Jean Rauzier, Brigitte Gicquel, Patrick Deschavanne

Mol Biol Evol· August 2007

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Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome.
Andrew M Shedlock, Christopher W Botka, Shaying Zhao, Jyoti Shetty, Tingting Zhang, Patrick J Deschavanne

Proc Natl Acad Sci U S A· February 2007

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Horizontal transfer of a virulence operon to the ancestor of Mycobacterium tuberculosis.
Vania Rosas-Magallanes, Patrick Deschavanne, Lluis Quintana-Murci, Roland Brosch, Brigitte Gicquel

Mol Biol Evol· June 2006

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Exploration of phylogenetic data using a global sequence analysis method.
Charles Chapus, Christine Dufraigne, Scott Edwards, Alain Giron, Bernard Fertil, Patrick Deschavanne

BMC Evol Biol· November 2005

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Indications for acquisition of reductive dehalogenase genes through horizontal gene transfer by Dehalococcoides ethenogenes strain 195.
Christophe Regeard, Julien Maillard, Christine Dufraigne, Patrick Deschavanne, Christof Holliger

Appl Environ Microbiol· June 2005

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Detection and characterization of horizontal transfers in prokaryotes using genomic signature.
Christine Dufraigne, Bernard Fertil, Sylvain Lespinats, Alain Giron, Patrick Deschavanne

Nucleic Acids Res· January 2005

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A genomic schism in birds revealed by phylogenetic analysis of DNA strings.
Scott V Edwards, Bernard Fertil, Alain Giron, Patrick J Deschavanne

Syst Biol· August 2002

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