Publications by authors named "Paulo Nuin"

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WormBase 2024: status and transitioning to Alliance infrastructure.
Paul W Sternberg, Kimberly Van Auken, Qinghua Wang, Adam Wright, Karen Yook, Paulo Nuin

Genetics· May 2024

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WormBase in 2022-data, processes, and tools for analyzing Caenorhabditis elegans.
Paul Davis, Magdalena Zarowiecki, Valerio Arnaboldi, Andrés Becerra, Scott Cain, Paulo Nuin

Genetics· April 2022

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Isolation of a Human Betaretrovirus from Patients with Primary Biliary Cholangitis.
Mariam Goubran, Weiwei Wang, Stanislav Indik, Alexander Faschinger, Shawn T Wasilenko, Paulo Nuin

Viruses· April 2022

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is Differentially Expressed Across Breast Cancer Subtypes with Low Expression Associated with Poor Overall Survival.
Fahed A Elian, Ubah Are, Sunita Ghosh, Paulo Nuin, Tim Footz

Breast Cancer (Dove Med Press)· March 2021

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WormBase: a modern Model Organism Information Resource.
Todd W Harris, Valerio Arnaboldi, Scott Cain, Juancarlos Chan, Wen J Chen, Paulo Nuin

Nucleic Acids Res· January 2020

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Correction to: Use of multicolor fluorescence in situ hybridization to detect deletions in clinical tissue sections.
Maisa Yoshimoto, Olga Ludkovski, Jennifer Good, Ciro Pereira, Robert J Gooding, Paulo Nuin

Lab Invest· June 2018

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Use of multicolor fluorescence in situ hybridization to detect deletions in clinical tissue sections.
Maisa Yoshimoto, Olga Ludkovski, Jennifer Good, Ciro Pereira, Robert J Gooding, Paulo Nuin

Lab Invest· April 2018

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WormBase 2017: molting into a new stage.
Raymond Y N Lee, Kevin L Howe, Todd W Harris, Valerio Arnaboldi, Scott Cain, Paulo Nuin

Nucleic Acids Res· January 2018

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WormBase 2016: expanding to enable helminth genomic research.
Kevin L Howe, Bruce J Bolt, Scott Cain, Juancarlos Chan, Wen J Chen, Paulo Nuin

Nucleic Acids Res· January 2016

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Exploring high dimensional data with Butterfly: a novel classification algorithm based on discrete dynamical systems.
Joseph Geraci, Moyez Dharsee, Paulo Nuin, Alexandria Haslehurst, Madhuri Koti

Bioinformatics· March 2014

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MicroRNA signature helps distinguish early from late biochemical failure in prostate cancer.
Zsuzsanna Lichner, Annika Fendler, Carol Saleh, Aurfan N Nasser, Dina Boles, Paulo S Nuin

Clin Chem· November 2013

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Identification of the IGF1/PI3K/NF κB/ERK gene signalling networks associated with chemotherapy resistance and treatment response in high-grade serous epithelial ovarian cancer.
Madhuri Koti, Robert J Gooding, Paulo Nuin, Alexandria Haslehurst, Colleen Crane

BMC Cancer· November 2013

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Cross-tolerance between osmotic and freeze-thaw stress in microbial assemblages from temperate lakes.
Sandra L Wilson, Corey Frazer, Brian F Cumming, Paulo A S Nuin, Virginia K Walker

FEMS Microbiol Ecol· November 2012

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Transcriptomic and metabolomic analysis of Yukon Thellungiella plants grown in cabinets and their natural habitat show phenotypic plasticity.
David R Guevara, Marc J Champigny, Ashley Tattersall, Jeff Dedrick, Chui E Wong, Paulo Nuin

BMC Plant Biol· October 2012

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EMT transcription factors snail and slug directly contribute to cisplatin resistance in ovarian cancer.
Alexandria M Haslehurst, Madhuri Koti, Moyez Dharsee, Paulo Nuin, Ken Evans

BMC Cancer· March 2012

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PTEN genomic deletions that characterize aggressive prostate cancer originate close to segmental duplications.
Maisa Yoshimoto, Olga Ludkovski, Dave DeGrace, Julia L Williams, Andrew Evans, Paulo Nuin

Genes Chromosomes Cancer· February 2012

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Design and verification of a pangenome microarray oligonucleotide probe set for Dehalococcoides spp.
Laura A Hug, Maryam Salehi, Paulo Nuin, Elisabeth R Tillier, Elizabeth A Edwards

Appl Environ Microbiol· August 2011

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No correlation between the molecular subtype of COL1A1-PDGFB fusion gene and the clinico-histopathological features of dermatofibrosarcoma protuberans.
Damien Giacchero, Georges Maire, Paulo A S Nuin, Frédéric Berthier, Nathalie Ebran

J Invest Dermatol· March 2010

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Variability of origin for the neocentromeric sequences in analphoid supernumerary marker chromosomes of well-differentiated liposarcomas.
Antoine Italiano, Georges Maire, Nicolas Sirvent, Paulo A S Nuin, Frédérique Keslair

Cancer Lett· January 2009

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Metaphase and array comparative genomic hybridization: unique copy number changes and gene amplification of medulloblastomas in South America.
Maisa Yoshimoto, Jane Bayani, Paulo A S Nuin, Nasjla S Silva, Sergio Cavalheiro

Cancer Genet Cytogenet· October 2006

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The accuracy of several multiple sequence alignment programs for proteins.
Paulo A S Nuin, Zhouzhi Wang, Elisabeth R M Tillier

BMC Bioinformatics· October 2006

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Interphase FISH analysis of PTEN in histologic sections shows genomic deletions in 68% of primary prostate cancer and 23% of high-grade prostatic intra-epithelial neoplasias.
Maisa Yoshimoto, Jean-Claude Cutz, Paulo A S Nuin, Anthony M Joshua, Jane Bayani

Cancer Genet Cytogenet· September 2006

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Transcriptional profiling implicates novel interactions between abiotic stress and hormonal responses in Thellungiella, a close relative of Arabidopsis.
Chui E Wong, Yong Li, Aurelie Labbe, David Guevara, Paulo Nuin

Plant Physiol· April 2006

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WinPop 2.5: software for representing population genetics phenomena.
Paulo A S Nuin

Brief Bioinform· December 2005

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SIMPROT: using an empirically determined indel distribution in simulations of protein evolution.
Andy Pang, Andrew D Smith, Paulo A S Nuin, Elisabeth R M Tillier

BMC Bioinformatics· September 2005

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