Publications by authors named "Perla Hamon"

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The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars.
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Perla Hamon

Nat Genet· April 2024

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The evolutionary history of three Baracoffea species from western Madagascar revealed by chloroplast and nuclear genomes.
Rickarlos Bezandry, Mathilde Dupeyron, Laura Natalia Gonzalez-Garcia, Artemis Anest, Perla Hamon

PLoS One· January 2024

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Metagenomics of African and (Rubiaceae) reveals the presence of leaf endophytes.
Brecht Verstraete, Steven Janssens, Petra De Block, Pieter Asselman, Gabriela Méndez, Perla Hamon

PeerJ· August 2023

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RETRACTED ARTICLE: Evidence of weak genetic differentiation of Striga gesnerioides populations collected in Senegal: possible relationship with traditional cowpea seed management.
Amidou N'Diaye, Dolou Charlotte Tonessia, Loïc Le Cunff, Perla Hamon, Serge Hamon

Theor Appl Genet· December 2022

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The absence of the caffeine synthase gene is involved in the naturally decaffeinated status of Coffea humblotiana, a wild species from Comoro archipelago.
Nathalie Raharimalala, Stephane Rombauts, Andrew McCarthy, Andréa Garavito, Simon Orozco-Arias, Perla Hamon

Sci Rep· April 2021

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WCSdb: a database of wild Coffea species.
Romain Guyot, Perla Hamon, Emmanuel Couturon, Nathalie Raharimalala, Jean-Jacques Rakotomalala

Database (Oxford)· November 2020

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Phenotypic diversity assessment within a major ex situ collection of wild endemic coffees in Madagascar.
Aurore Rimlinger, Nathalie Raharimalala, Véronique Letort, Jean-Jacques Rakotomalala, Dominique Crouzillat, Perla Hamon

Ann Bot· October 2020

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Complex evolutionary history of coffees revealed by full plastid genomes and 28,800 nuclear SNP analyses, with particular emphasis on Coffea canephora (Robusta coffee).
Jean-Claude Charr, Andrea Garavito, Christophe Guyeux, Dominique Crouzillat, Patrick Descombes, Perla Hamon

Mol Phylogenet Evol· October 2020

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Chloroplast genomes of Rubiaceae: Comparative genomics and molecular phylogeny in subfamily Ixoroideae.
Serigne Ndiawar Ly, Andrea Garavito, Petra De Block, Pieter Asselman, Christophe Guyeux, Perla Hamon

PLoS One· July 2020

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Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species.
Christophe Guyeux, Jean-Claude Charr, Hue T M Tran, Agnelo Furtado, Robert J Henry, Perla Hamon

PLoS One· February 2020

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Distribution of Divo in Coffea genomes, a poorly described family of angiosperm LTR-Retrotransposons.
Mathilde Dupeyron, Rogerio Fernandes de Souza, Perla Hamon, Alexandre de Kochko, Dominique Crouzillat

Mol Genet Genomics· August 2017

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and (Rubiaceae): two new species from the Lower Guinean and Congolian Domains.
Herman Taedoumg, Bonaventure Sonke, Perla Hamon, Petra De Block

PhytoKeys· July 2017

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Genotyping-by-sequencing provides the first well-resolved phylogeny for coffee (Coffea) and insights into the evolution of caffeine content in its species: GBS coffee phylogeny and the evolution of caffeine content.
Perla Hamon, Corrinne E Grover, Aaron P Davis, Jean-Jacques Rakotomalala, Nathalie E Raharimalala, Serge Hamon

Mol Phylogenet Evol· April 2017

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Partial sequencing reveals the transposable element composition of Coffea genomes and provides evidence for distinct evolutionary stories.
Romain Guyot, Thibaud Darré, Mathilde Dupeyron, Alexandre de Kochko, Serge Hamon, Perla Hamon

Mol Genet Genomics· October 2016

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Shift in precipitation regime promotes interspecific hybridization of introduced Coffea species.
Céline Gomez, Marc Despinoy, Serge Hamon, Perla Hamon, Danyela Salmon

Ecol Evol· May 2016

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Active transposable elements recover species boundaries and geographic structure in Madagascan coffee species.
Julissa Roncal, Romain Guyot, Perla Hamon, Dominique Crouzillat, Michel Rigoreau

Mol Genet Genomics· February 2016

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Large distribution and high sequence identity of a Copia-type retrotransposon in angiosperm families.
Elaine Silva Dias, Clémence Hatt, Serge Hamon, Perla Hamon, Michel Rigoreau

Plant Mol Biol· September 2015

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Terminal-repeat retrotransposons with GAG domain in plant genomes: a new testimony on the complex world of transposable elements.
Cristian Chaparro, Thomas Gayraud, Rogerio Fernandes de Souza, Douglas Silva Domingues, Sélastique Akaffou, Serge Hamon, Perla Hamon

Genome Biol Evol· January 2015

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Genetic structure and diversity of coffee (Coffea) across Africa and the Indian Ocean islands revealed using microsatellites.
Norosoa J Razafinarivo, Romain Guyot, Aaron P Davis, Emmanuel Couturon, Serge Hamon, Perla Hamon

Ann Bot· February 2013

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Microsatellite markers for Amborella (Amborellaceae), a monotypic genus endemic to New Caledonia.
Valérie Poncet, Marie Couderc, Christine Tranchant-Dubreuil, Céline Gomez, Perla Hamon, Serge Hamon

Am J Bot· October 2012

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Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades.
Romain Guyot, Florent Lefebvre-Pautigny, Christine Tranchant-Dubreuil, Michel Rigoreau, Perla Hamon, Serge Hamon

BMC Genomics· March 2012

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Site-Specific Insertion Polymorphism of the MITE Alex-1 in the Genus Coffea Suggests Interspecific Gene Flow.
Christine Dubreuil-Tranchant, Romain Guyot, Amira Guellim, Caroline Duret, Marion de la Mare, Serge Hamon, Perla Hamon

Int J Evol Biol· November 2011

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Two novel Ty1-copia retrotransposons isolated from coffee trees can effectively reveal evolutionary relationships in the Coffea genus (Rubiaceae).
Perla Hamon, Pierre-Olivier Duroy, Christine Dubreuil-Tranchant, Paulo Mafra D'Almeida Costa, Caroline Duret, Serge Hamon

Mol Genet Genomics· June 2011

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MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family.
Olga Plechakova, Christine Tranchant-Dubreuil, Fabrice Benedet, Marie Couderc, Alexandra Tinaut, Perla Hamon, Serge Hamon

BMC Plant Biol· September 2009

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Current genetic differentiation of Coffea canephora Pierre ex A. Froehn in the Guineo-Congolian African zone: cumulative impact of ancient climatic changes and recent human activities.
Céline Gomez, Stéphane Dussert, Perla Hamon, Serge Hamon, Alexandre de Kochko

BMC Evol Biol· July 2009

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