Publications by authors named "Peter A Dimaggio"

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Tracking DOT1L methyltransferase activity by stable isotope labelling using a selective synthetic co-factor.
Nicole Trainor, Harry J Whitwell, Beatriz Jiménez, Katie Addison, Emily Leonidou, Peter A DiMaggio

Commun Chem· June 2024

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Publisher Correction: Decoding chromatin states by proteomic profiling of nucleosome readers.
Saulius Lukauskas, Andrey Tvardovskiy, Nhuong V Nguyen, Mara Stadler, Peter Faull, Peter A DiMaggio

Nature· April 2024

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Decoding chromatin states by proteomic profiling of nucleosome readers.
Saulius Lukauskas, Andrey Tvardovskiy, Nhuong V Nguyen, Mara Stadler, Peter Faull, Peter A DiMaggio

Nature· March 2024

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An Integrated Chemical Proteomics Approach for Quantitative Profiling of Intracellular ADP-Ribosylation.
Karunakaran Kalesh, Saulius Lukauskas, Aaron J Borg, Ambrosius P Snijders, Vinay Ayyappan, Peter A DiMaggio

Sci Rep· April 2019

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Unbiased Mass Spectrometry Elucidation of the Targets and Mechanisms of Activity-Based Probes: A Case Study Involving Sulfonyl Fluorides.
Thomas E J Chavas, Matthew J Fuchter, Peter A DiMaggio

ACS Chem Biol· October 2018

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Multiple Levels of Control Determine How E4bp4/Nfil3 Regulates NK Cell Development.
Tomasz Kostrzewski, Aaron J Borg, Yiran Meng, Iva Filipovic, Victoria Male, Peter A DiMaggio

J Immunol· February 2018

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Plasmodium falciparum PfSET7: enzymatic characterization and cellular localization of a novel protein methyltransferase in sporozoite, liver and erythrocytic stage parasites.
Patty B Chen, Shuai Ding, Gigliola Zanghì, Valérie Soulard, Peter A DiMaggio

Sci Rep· February 2016

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Fullerene oxidation and clustering in solution induced by light.
Rajeev Dattani, Kirsty F Gibson, Sheridan Few, Aaron J Borg, Peter A DiMaggio

J Colloid Interface Sci· May 2015

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Paired single residue-transposed Lys-N and Lys-C digestions for label-free identification of N-terminal and C-terminal MS/MS peptide product ions: ultrahigh resolution Fourier transform ion cyclotron resonance mass spectrometry and tandem mass spectrometry for peptide de novo sequencing.
Naomi C Brownstein, Xiaoyan Guan, Yuan Mao, Qian Zhang, Peter A DiMaggio

Rapid Commun Mass Spectrom· April 2015

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Quantitative proteomic discovery of dynamic epigenome changes that control human cytomegalovirus (HCMV) infection.
Christine M O'Connor, Peter A DiMaggio, Thomas Shenk, Benjamin A Garcia

Mol Cell Proteomics· September 2014

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On the histone lysine methyltransferase activity of fungal metabolite chaetocin.
Fanny L Cherblanc, Kathryn L Chapman, Jim Reid, Aaron J Borg, Sandeep Sundriyal, Peter A DiMaggio

J Med Chem· November 2013

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A quantitative atlas of histone modification signatures from human cancer cells.
Gary Leroy, Peter A Dimaggio, Eric Y Chan, Barry M Zee, M Andres Blanco

Epigenetics Chromatin· July 2013

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Proteomics in epigenetics: new perspectives for cancer research.
Till Bartke, Julie Borgel, Peter A DiMaggio

Brief Funct Genomics· May 2013

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Quantitative dynamics of the link between cellular metabolism and histone acetylation.
Adam G Evertts, Barry M Zee, Peter A Dimaggio, Michelle Gonzales-Cope, Hilary A Coller

J Biol Chem· April 2013

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Novel phosphorylation sites in the S. cerevisiae Cdc13 protein reveal new targets for telomere length regulation.
Yun Wu, Peter A DiMaggio, David H Perlman, Virginia A Zakian, Benjamin A Garcia

J Proteome Res· January 2013

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PILOT_PROTEIN: identification of unmodified and modified proteins via high-resolution mass spectrometry and mixed-integer linear optimization.
Richard C Baliban, Peter A Dimaggio, Mariana D Plazas-Mayorca, Benjamin A Garcia, Christodoulos A Floudas

J Proteome Res· September 2012

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Proteogenomic characterization and mapping of nucleosomes decoded by Brd and HP1 proteins.
Gary LeRoy, Iouri Chepelev, Peter A DiMaggio, Mario A Blanco, Barry M Zee

Genome Biol· August 2012

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Histone H3 lysine 56 methylation regulates DNA replication through its interaction with PCNA.
Yongxin Yu, Chunying Song, Qiongyi Zhang, Peter A DiMaggio, Benjamin A Garcia

Mol Cell· April 2012

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Novel protein identification methods for biomarker discovery via a proteomic analysis of periodontally healthy and diseased gingival crevicular fluid samples.
Richard C Baliban, Dimitra Sakellari, Zukui Li, Peter A DiMaggio, Benjamin A Garcia

J Clin Periodontol· March 2012

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A chemical probe selectively inhibits G9a and GLP methyltransferase activity in cells.
Masoud Vedadi, Dalia Barsyte-Lovejoy, Feng Liu, Sylvie Rival-Gervier, Abdellah Allali-Hassani, Peter A Dimaggio

Nat Chem Biol· July 2011

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The significance, development and progress of high-throughput combinatorial histone code analysis.
Nicolas L Young, Peter A Dimaggio, Benjamin A Garcia

Cell Mol Life Sci· December 2010

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Global turnover of histone post-translational modifications and variants in human cells.
Barry M Zee, Rebecca S Levin, Peter A DiMaggio, Benjamin A Garcia

Epigenetics Chromatin· December 2010

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A novel framework for predicting in vivo toxicities from in vitro data using optimal methods for dense and sparse matrix reordering and logistic regression.
Peter A DiMaggio, Ashwin Subramani, Richard S Judson, Christodoulos A Floudas

Toxicol Sci· November 2010

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Quantitative proteomics reveals direct and indirect alterations in the histone code following methyltransferase knockdown.
Mariana D Plazas-Mayorca, Joshua S Bloom, Ulrike Zeissler, Gary Leroy, Nicolas L Young, Peter A DiMaggio

Mol Biosyst· September 2010

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Collective mass spectrometry approaches reveal broad and combinatorial modification of high mobility group protein A1a.
Nicolas L Young, Mariana D Plazas-Mayorca, Peter A DiMaggio, Ian Z Flaniken, Andrea J Beltran

J Am Soc Mass Spectrom· June 2010

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