Publications by authors named "David H Perlman"

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Prioritized mass spectrometry increases the depth, sensitivity and data completeness of single-cell proteomics.
R Gray Huffman, Andrew Leduc, Christoph Wichmann, Marco Di Gioia, Francesco Borriello, Harrison Specht, Jason Derks, Saad Khan, Luke Khoury, Edward Emmott

Nat Methods· May 2023

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Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments.
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury

Nat Methods· March 2023

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Multiplexed single-cell proteomics using SCoPE2.
Aleksandra A Petelski, Edward Emmott, Andrew Leduc, R Gray Huffman, Harrison Specht, David H Perlman, Nikolai Slavov

Nat Protoc· December 2021

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Single-cell proteomic and transcriptomic analysis of macrophage heterogeneity using SCoPE2.
Harrison Specht, Edward Emmott, Aleksandra A Petelski, R Gray Huffman, David H Perlman, Marco Serra, Peter Kharchenko, Antonius Koller, Nikolai Slavov

January 2021

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Gut microbial β-glucuronidases influence endobiotic homeostasis and are modulated by diverse therapeutics.
Joshua B Simpson, Morgan E Walker, Joshua J Sekela, Samantha M Ivey, Parth B Jariwala, David H Perlman

Cell Host Microbe· June 2024

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Detection of cell-cell interactions via photocatalytic cell tagging.
Rob C Oslund, Tamara Reyes-Robles, Cory H White, Jake H Tomlinson, Kelly A Crotty, David H Perlman

Nat Chem Biol· August 2022

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Antibiotic Adjuvant Activity Revealed in a Photoaffinity Approach to Determine the Molecular Target of Antipyocyanin Compounds.
Zinan Zhang, Dominic Ortega, Anthony Rush, Lauren R Blankenship, Zi Jun Cheng, David H Perlman

ACS Infect Dis· March 2021

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Bisphosphoglycerate mutase controls serine pathway flux via 3-phosphoglycerate.
Rob C Oslund, Xiaoyang Su, Michael Haugbro, Jung-Min Kee, Mark Esposito, David H Perlman

Nat Chem Biol· October 2017

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Digestomics: an emerging strategy for comprehensive analysis of protein catabolism.
Travis S Bingeman, David H Perlman, Douglas G Storey, Ian A Lewis

Curr Opin Biotechnol· February 2017

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An oligotrophic deep-subsurface community dependent on syntrophy is dominated by sulfur-driven autotrophic denitrifiers.
Maggie C Y Lau, Thomas L Kieft, Olukayode Kuloyo, Borja Linage-Alvarez, Esta van Heerden, David H Perlman

Proc Natl Acad Sci U S A· December 2016

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Inositol polyphosphates intersect with signaling and metabolic networks via two distinct mechanisms.
Mingxuan Wu, Lucy S Chong, David H Perlman, Adam C Resnick, Dorothea Fiedler

Proc Natl Acad Sci U S A· November 2016

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Systems-level analysis of mechanisms regulating yeast metabolic flux.
Sean R Hackett, Vito R T Zanotelli, Wenxin Xu, Jonathan Goya, Junyoung O Park, David H Perlman

Science· October 2016

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Cryptic protein-protein interaction motifs in the cytoplasmic domain of MHCI proteins.
Karla K Frietze, Adlai L Pappy, Jack W Melson, Emily E O'Driscoll, Carolyn M Tyler, David H Perlman

BMC Immunol· July 2016

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Proteome-wide analysis reveals widespread lysine acetylation of major protein complexes in the malaria parasite.
Simon A Cobbold, Joana M Santos, Alejandro Ochoa, David H Perlman, Manuel Llinás

Sci Rep· January 2016

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Human cytomegalovirus pUL97 kinase induces global changes in the infected cell phosphoproteome.
Adam Oberstein, David H Perlman, Thomas Shenk, Laura J Terry

Proteomics· June 2015

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Mitotic Control of Planar Cell Polarity by Polo-like Kinase 1.
Rezma Shrestha, Katherine A Little, Joel V Tamayo, Wenyang Li, David H Perlman

Dev Cell· June 2015

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Impact of the adenoviral E4 Orf3 protein on the activity and posttranslational modification of p53.
Caroline J DeHart, David H Perlman, S J Flint

J Virol· March 2015

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ChelomEx: Isotope-assisted discovery of metal chelates in complex media using high-resolution LC-MS.
Oliver Baars, François M M Morel, David H Perlman

Anal Chem· November 2014

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Transmembrane domain of surface-exposed outer membrane lipoprotein RcsF is threaded through the lumen of β-barrel proteins.
Anna Konovalova, David H Perlman, Charles E Cowles, Thomas J Silhavy

Proc Natl Acad Sci U S A· October 2014

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A phosphohistidine proteomics strategy based on elucidation of a unique gas-phase phosphopeptide fragmentation mechanism.
Rob C Oslund, Jung-Min Kee, Anthony D Couvillon, Vivek N Bhatia, David H Perlman

J Am Chem Soc· September 2014

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Functional role of autophagy-mediated proteome remodeling in cell survival signaling and innate immunity.
Robin Mathew, Sinan Khor, Sean R Hackett, Joshua D Rabinowitz, David H Perlman

Mol Cell· September 2014

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Mutated in colorectal cancer (MCC) is a novel oncogene in B lymphocytes.
Shanique K E Edwards, Jacqueline Baron, Carissa R Moore, Yan Liu, David H Perlman

J Hematol Oncol· September 2014

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The architecture of a scrambled genome reveals massive levels of genomic rearrangement during development.
Xiao Chen, John R Bracht, Aaron David Goldman, Egor Dolzhenko, Derek M Clay, David H Perlman

Cell· August 2014

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Transcription-independent functions of an RNA polymerase II subunit, Rpb2, during genome rearrangement in the ciliate, Oxytricha trifallax.
Jaspreet S Khurana, Xing Wang, Xiao Chen, David H Perlman, Laura F Landweber

Genetics· July 2014

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Kinetic flux profiling elucidates two independent acetyl-CoA biosynthetic pathways in Plasmodium falciparum.
Simon A Cobbold, Ashley M Vaughan, Ian A Lewis, Heather J Painter, Nelly Camargo, David H Perlman

J Biol Chem· December 2013

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