Publications by authors named "Peter Bankhead"

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Society for Immunotherapy of Cancer: Standards for Reporting of Multiplex Immunohistochemistry/Immunofluorescence Assays (STORMI).
Sam Sater, Carlo B Bifulco, Jaime Rodriguez-Canales, Joe Yeong, Guray Akturk, Peter Bankhead

J Immunother Cancer· December 2025

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MIFA: Metadata, Incentives, Formats and Accessibility guidelines to improve the reuse of AI datasets for bioimage analysis.
Teresa Zulueta-Coarasa, Florian Jug, Aastha Mathur, Josh Moore, Arrate Muñoz-Barrutia, Peter Bankhead

Nat Methods· November 2025

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QuPath Edu and OpenMicroanatomy: Open-source virtual microscopy tools for medical education.
Aaron Yli-Hallila, Peter Bankhead, Mark J Arends, Petri Lehenkari, Sanna Palosaari

J Anat· May 2025

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Liver-Quant: Feature-based image analysis toolkit for automatic quantification of metabolic dysfunction-associated steatotic liver disease.
Mohsen Farzi, Clare McGenity, Alyn Cratchley, Leo Leplat, Peter Bankhead

Comput Biol Med· May 2025

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GelGenie: an AI-powered framework for gel electrophoresis image analysis.
Matthew Aquilina, Nathan J W Wu, Kiros Kwan, Filip Bušić, James Dodd, Peter Bankhead

Nat Commun· May 2025

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The crucial role of bioimage analysts in scientific research and publication.
Beth A Cimini, Peter Bankhead, Rocco D'Antuono, Elnaz Fazeli, Julia Fernandez-Rodriguez

J Cell Sci· October 2024

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OPTIMAL: An OPTimized Imaging Mass cytometry AnaLysis framework for benchmarking segmentation and data exploration.
Bethany Hunter, Ioana Nicorescu, Emma Foster, David McDonald, Gillian Hulme, Peter Bankhead

Cytometry A· January 2024

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Open and reusable deep learning for pathology with WSInfer and QuPath.
Jakub R Kaczmarzyk, Alan O'Callaghan, Fiona Inglis, Swarad Gat, Tahsin Kurc, Peter Bankhead

NPJ Precis Oncol· January 2024

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AimSeg: A machine-learning-aided tool for axon, inner tongue and myelin segmentation.
Pau Carrillo-Barberà, Ana Maria Rondelli, Jose Manuel Morante-Redolat, Bertrand Vernay, Anna Williams, Peter Bankhead

PLoS Comput Biol· November 2023

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A biologist's guide to planning and performing quantitative bioimaging experiments.
Rebecca A Senft, Barbara Diaz-Rohrer, Pina Colarusso, Lucy Swift, Nasim Jamali, Peter Bankhead

PLoS Biol· June 2023

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QuPath Algorithm Accurately Identifies MLH1-Deficient Inflammatory Bowel Disease-Associated Colorectal Cancers in a Tissue Microarray.
Ross J Porter, Shahida Din, Peter Bankhead, Anca Oniscu, Mark J Arends

Diagnostics (Basel)· May 2023

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MYC sensitises cells to apoptosis by driving energetic demand.
Joy Edwards-Hicks, Huizhong Su, Maurizio Mangolini, Kubra K Yoneten, Jimi Wills, Peter Bankhead

Nat Commun· August 2022

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Developing image analysis methods for digital pathology.
Peter Bankhead

J Pathol· July 2022

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Recent Advances in Pathology: the 2022 Annual Review Issue of The Journal of Pathology.
C Simon Herrington, Richard Poulsom, Nischalan Pillay, Peter Bankhead, Philip J Coates

J Pathol· July 2022

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MITI minimum information guidelines for highly multiplexed tissue images.
Denis Schapiro, Clarence Yapp, Artem Sokolov, Sheila M Reynolds, Yu-An Chen, Peter Bankhead

Nat Methods· March 2022

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Development of a semi-automated method for tumour budding assessment in colorectal cancer and comparison with manual methods.
Natalie C Fisher, Maurice B Loughrey, Helen G Coleman, Melvin D Gelbard, Peter Bankhead

Histopathology· February 2022

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Developing open-source software for bioimage analysis: opportunities and challenges.
Florian Levet, Anne E Carpenter, Kevin W Eliceiri, Anna Kreshuk, Peter Bankhead

F1000Res· July 2021

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Using the R Package Spatstat to Assess Inhibitory Effects of Microregional Hypoxia on the Infiltration of Cancers of the Head and Neck Region by Cytotoxic T Lymphocytes.
Justus Kaufmann, Christophe A N Biscio, Peter Bankhead, Stefanie Zimmer, Heinz Schmidberger

Cancers (Basel)· April 2021

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Identifying mismatch repair-deficient colon cancer: near-perfect concordance between immunohistochemistry and microsatellite instability testing in a large, population-based series.
Maurice B Loughrey, Jason McGrath, Helen G Coleman, Peter Bankhead, Perry Maxwell

Histopathology· February 2021

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Deep Learning-Based Segmentation and Quantification in Experimental Kidney Histopathology.
Nassim Bouteldja, Barbara M Klinkhammer, Roman D Bülow, Patrick Droste, Simon W Otten, Peter Bankhead

J Am Soc Nephrol· January 2021

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Author Correction: Pan-cancer image-based detection of clinically actionable genetic alterations.
Jakob Nikolas Kather, Lara R Heij, Heike I Grabsch, Chiara Loeffler, Amelie Echle, Peter Bankhead

Nat Cancer· November 2020

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Human Pancreatic Carcinoma-Associated Fibroblasts Promote Expression of Co-inhibitory Markers on CD4 and CD8 T-Cells.
Laia Gorchs, Carlos Fernández Moro, Peter Bankhead, Katharina P Kern, Imrul Sadeak

Front Immunol· October 2020

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Immune status is prognostic for poor survival in colorectal cancer patients and is associated with tumour hypoxia.
Stephanie G Craig, Matthew P Humphries, Matthew Alderdice, Victoria Bingham, Susan D Richman, Peter Bankhead

Br J Cancer· October 2020

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Pan-cancer image-based detection of clinically actionable genetic alterations.
Jakob Nikolas Kather, Lara R Heij, Heike I Grabsch, Chiara Loeffler, Amelie Echle, Peter Bankhead

Nat Cancer· August 2020

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Topography of cancer-associated immune cells in human solid tumors.
Jakob Nikolas Kather, Meggy Suarez-Carmona, Pornpimol Charoentong, Cleo-Aron Weis, Daniela Hirsch, Peter Bankhead

Elife· September 2018

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