Publications by authors named "Peter C Fitzgerald"

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The ETS transcription factor ERF controls the exit from the naïve pluripotent state in a MAPK-dependent manner.
Maria Vega-Sendino, Teresa Olbrich, Desiree Tillo, Andy D Tran, Catherine N Domingo, Peter C FitzGerald

Sci Adv· October 2021

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CTCF is a barrier for 2C-like reprogramming.
Teresa Olbrich, Maria Vega-Sendino, Desiree Tillo, Wei Wu, Nicholas Zolnerowich, Peter C FitzGerald

Nat Commun· August 2021

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Nascent RNA sequencing identifies a widespread sigma70-dependent pausing regulated by Gre factors in bacteria.
Zhe Sun, Alexander V Yakhnin, Peter C FitzGerald, Carl E Mclntosh, Mikhail Kashlev

Nat Commun· February 2021

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NusG controls transcription pausing and RNA polymerase translocation throughout the genome.
Alexander V Yakhnin, Peter C FitzGerald, Carl McIntosh, Helen Yakhnin, Maria Kireeva

Proc Natl Acad Sci U S A· September 2020

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GABPα and CREB1 Binding to Double Nucleotide Polymorphisms of Their Consensus Motifs and Cooperative Binding to the Composite ETS ⇔ CRE Motif ().
Nima Assad, Desiree Tillo, Sreejana Ray, Alexa Dzienny, Peter C FitzGerald

ACS Omega· June 2019

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Metagenomic Discovery of 83 New Human Papillomavirus Types in Patients with Immunodeficiency.
Diana V Pastrana, Alberto Peretti, Nicole L Welch, Cinzia Borgogna, Carlotta Olivero, Peter C FitzGerald

mSphere· December 2018

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Characterization of BK Polyomaviruses from Kidney Transplant Recipients Suggests a Role for APOBEC3 in Driving In-Host Virus Evolution.
Alberto Peretti, Eileen M Geoghegan, Diana V Pastrana, Sigrun Smola, Pascal Feld, Peter C FitzGerald

Cell Host Microbe· May 2018

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An Efficient Single-Cell RNA-Seq Approach to Identify Neoantigen-Specific T Cell Receptors.
Yong-Chen Lu, Zhili Zheng, Paul F Robbins, Eric Tran, Todd D Prickett, Peter C Fitzgerald

Mol Ther· February 2018

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Molecular basis of CENP-C association with the CENP-A nucleosome at yeast centromeres.
Hua Xiao, Feng Wang, Jan Wisniewski, Alexey K Shaytan, Rodolfo Ghirlando, Peter C FitzGerald

Genes Dev· October 2017

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Methylated Cytosines Mutate to Transcription Factor Binding Sites that Drive Tetrapod Evolution.
Ximiao He, Desiree Tillo, Jeff Vierstra, Khund-Sayeed Syed, Callie Deng, Peter C FitzGerald

Genome Biol Evol· October 2015

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Hamburger polyomaviruses.
Alberto Peretti, Peter C FitzGerald, Valery Bliskovsky, Christopher B Buck, Diana V Pastrana

J Gen Virol· April 2015

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Genome Sequence of a Fish-Associated Polyomavirus, Black Sea Bass (Centropristis striata) Polyomavirus 1.
Alberto Peretti, Peter C FitzGerald, Valery Bliskovsky, Diana V Pastrana, Christopher B Buck

Genome Announc· January 2015

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Comparative validation of the D. melanogaster modENCODE transcriptome annotation.
Zhen-Xia Chen, David Sturgill, Jiaxin Qu, Huaiyang Jiang, Soo Park, Peter C FitzGerald

Genome Res· July 2014

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Integration profiling of gene function with dense maps of transposon integration.
Yabin Guo, Jung Min Park, Bowen Cui, Elizabeth Humes, Sunil Gangadharan, Peter C FitzGerald

Genetics· October 2013

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A divergent variant of the eleventh human polyomavirus species, saint louis polyomavirus.
Diana V Pastrana, Peter C Fitzgerald, Giao Q Phan, Manish T Raiji, Philip M Murphy

Genome Announc· October 2013

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Nucleosome-free region dominates histone acetylation in targeting SWR1 to promoters for H2A.Z replacement.
Anand Ranjan, Gaku Mizuguchi, Peter C FitzGerald, Debbie Wei, Feng Wang

Cell· September 2013

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Contribution of nucleosome binding preferences and co-occurring DNA sequences to transcription factor binding.
Ximiao He, Raghunath Chatterjee, Sam John, Hector Bravo, B K Sathyanarayana, Peter C FitzGerald

BMC Genomics· June 2013

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Evidence for two different regulatory mechanisms linking replication and segregation of vibrio cholerae chromosome II.
Tatiana Venkova-Canova, Jong Hwan Baek, Peter C Fitzgerald, Melanie Blokesch, Dhruba K Chattoraj

PLoS Genet· June 2013

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Overlapping ETS and CRE Motifs ((G/C)CGGAAGTGACGTCA) preferentially bound by GABPα and CREB proteins.
Raghunath Chatterjee, Jianfei Zhao, Ximiao He, Andrey Shlyakhtenko, Ishminder Mann, Peter C FitzGerald

G3 (Bethesda)· October 2012

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Stepwise histone replacement by SWR1 requires dual activation with histone H2A.Z and canonical nucleosome.
Ed Luk, Anand Ranjan, Peter C Fitzgerald, Gaku Mizuguchi, Yingzi Huang

Cell· November 2010

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Cellular stress created by intermediary metabolite imbalances.
Sang Jun Lee, Andrei Trostel, Phuoc Le, Rajendran Harinarayanan, Peter C Fitzgerald

Proc Natl Acad Sci U S A· November 2009

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All and only CpG containing sequences are enriched in promoters abundantly bound by RNA polymerase II in multiple tissues.
Julian M Rozenberg, Andrey Shlyakhtenko, Kimberly Glass, Vikas Rishi, Maxim V Myakishev, Peter C FitzGerald

BMC Genomics· February 2008

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Comparative genomics of Drosophila and human core promoters.
Peter C FitzGerald, David Sturgill, Andrey Shyakhtenko, Brian Oliver, Charles Vinson

Genome Biol· May 2007

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Distinct roles of HDAC complexes in promoter silencing, antisense suppression and DNA damage protection.
Estelle Nicolas, Takatomi Yamada, Hugh P Cam, Peter C Fitzgerald, Ryuji Kobayashi

Nat Struct Mol Biol· May 2007

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The conserved tyrosine residues 401 and 1044 in ATP sites of human P-glycoprotein are critical for ATP binding and hydrolysis: evidence for a conserved subdomain, the A-loop in the ATP-binding cassette.
In-Wha Kim, Xiang-Hong Peng, Zuben E Sauna, Peter C FitzGerald, Di Xia

Biochemistry· June 2006

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