Publications by authors named "Peter J Cock"

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Evidence for an Opportunistic and Endophytic Lifestyle of the Bursaphelenchus xylophilus-Associated Bacteria Serratia marcescens PWN146 Isolated from Wilting Pinus pinaster.
Cláudia S L Vicente, Francisco X Nascimento, Pedro Barbosa, Huei-Mien Ke, Isheng J Tsai, Peter J A Cock

Microb Ecol· October 2016

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The 2016 Bioinformatics Open Source Conference (BOSC).
Nomi L Harris, Peter J A Cock, Brad Chapman, Christopher J Fields, Karsten Hokamp

F1000Res· October 2016

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NCBI BLAST+ integrated into Galaxy.
Peter J A Cock, John M Chilton, Björn Grüning, James E Johnson, Nicola Soranzo

Gigascience· July 2016

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The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence.
Sebastian Eves-van den Akker, Dominik R Laetsch, Peter Thorpe, Catherine J Lilley, Etienne G J Danchin, Peter J A Cock

Genome Biol· June 2016

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FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation.
Jerven T Bolleman, Christopher J Mungall, Francesco Strozzi, Joachim Baran, Michel Dumontier, Peter J A Cock

J Biomed Semantics· June 2016

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The genome and genetics of a high oxidative stress tolerant Serratia sp. LCN16 isolated from the plant parasitic nematode Bursaphelenchus xylophilus.
Claudia S L Vicente, Francisco X Nascimento, Yoriko Ikuyo, Peter J A Cock, Manuel Mota

BMC Genomics· April 2016

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Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets.
Peter Thorpe, Peter J A Cock, Jorunn Bos

BMC Genomics· March 2016

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Identification and characterization of parasitism genes from the pinewood nematode Bursaphelenchus xylophilus reveals a multilayered detoxification strategy.
Margarida Espada, Ana Cláudia Silva, Sebastian Eves van den Akker, Peter J A Cock, Manuel Mota

Mol Plant Pathol· February 2016

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Gene expression changes in diapause or quiescent potato cyst nematode, Globodera pallida, eggs after hydration or exposure to tomato root diffusate.
Juan Emilio Palomares-Rius, Pete Hedley, Peter J A Cock, Jenny A Morris, John T Jones

PeerJ· February 2016

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The 2015 Bioinformatics Open Source Conference (BOSC 2015).
Nomi L Harris, Peter J A Cock, Hilmar Lapp, Brad Chapman, Rob Davey

PLoS Comput Biol· February 2016

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A metagenetic approach to determine the diversity and distribution of cyst nematodes at the level of the country, the field and the individual.
Sebastian Eves-van den Akker, Catherine J Lilley, Alex Reid, Jon Pickup, Eric Anderson, Peter J A Cock

Mol Ecol· December 2015

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Distinct circular single-stranded DNA viruses exist in different soil types.
Brian Reavy, Maud M Swanson, Peter J A Cock, Lorna Dawson, Thomas E Freitag

Appl Environ Microbiol· June 2015

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Community-driven development for computational biology at Sprints, Hackathons and Codefests.
Steffen Möller, Enis Afgan, Michael Banck, Raoul J P Bonnal, Timothy Booth, Peter J A Cock

BMC Bioinformatics· April 2015

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The Bioinformatics Open Source Conference (BOSC) 2013.
Nomi L Harris, Peter J A Cock, Brad A Chapman, Jeremy Goecks, Hans-Rudolf Hotz

Bioinformatics· January 2015

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Galaxy as a platform for identifying candidate pathogen effectors.
Peter J A Cock, Leighton Pritchard

Methods Mol Biol· November 2014

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Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallida.
Peter Thorpe, Sophie Mantelin, Peter Ja Cock, Vivian C Blok, Mirela C Coke

BMC Genomics· October 2014

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The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes.
Sebastian Eves-van den Akker, Catherine J Lilley, Etienne G J Danchin, Corinne Rancurel, Peter J A Cock

Genome Biol Evol· August 2014

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The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode.
James A Cotton, Catherine J Lilley, Laura M Jones, Taisei Kikuchi, Adam J Reid, Peter J A Cock

Genome Biol· March 2014

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BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.
Toshiaki Katayama, Mark D Wilkinson, Kiyoko F Aoki-Kinoshita, Shuichi Kawashima, Yasunori Yamamoto, Peter Ja Cock

J Biomed Semantics· February 2014

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Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations.
Florian Jupe, Kamil Witek, Walter Verweij, Jadwiga Sliwka, Leighton Pritchard, Peter J Cock

Plant J· November 2013

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Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology.
Peter J A Cock, Björn A Grüning, Konrad Paszkiewicz, Leighton Pritchard

PeerJ· October 2013

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Activation of hatching in diapaused and quiescent Globodera pallida.
Juan E Palomares-Rius, John T Jones, Peter J Cock, Pablo Castillo, Vivian C Blok

Parasitology· April 2013

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The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.
Toshiaki Katayama, Mark D Wilkinson, Gos Micklem, Shuichi Kawashima, Atsuko Yamaguchi, Peter Ja Cock

J Biomed Semantics· February 2013

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Comparison of transcript profiles in different life stages of the nematode Globodera pallida under different host potato genotypes.
Juan E Palomares-Rius, Pete E Hedley, Peter J A Cock, Jenny A Morris, John T Jones

Mol Plant Pathol· December 2012

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Bio.Phylo: a unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython.
Eric Talevich, Brandon M Invergo, Peter J A Cock, Brad A Chapman

BMC Bioinformatics· August 2012

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