Publications by authors named "Peter Sorger"

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Antigen reactivity defines tissue-resident memory and exhausted T cells in tumors.
Thomas N Burn, Jan Schröder, Luke C Gandolfo, Maleika Osman, Elanor N Wainwright, Peter K Sorger

Nat Immunol· January 2026

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Spatially-resolved Embedding Analysis with Linked Imaging Data.
Simon Warchol, Grace Guo, Johannes Knittel, Dan Freeman, Usha Bhalla, Peter K Sorger

IEEE Trans Vis Comput Graph· December 2025

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Mechanisms of tumor persistence in metastatic melanoma following successful immunotherapy.
Yingxiao Shi, Zoltan Maliga, Tuulia Vallius, Shishir M Pant, Roxanne Pelletier, Peter K Sorger

bioRxiv· December 2025

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CRATER tumor niches facilitate CD8 T cell engagement and correspond with immunotherapy success.
Aya Ludin, Georgia L Stirtz, Asaf Tal, Ajit J Nirmal, Kathleen L Pfaff, Peter K Sorger

Cell· November 2025

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Spatial Profiling of Elements through Matrix-Assisted Laser Desorption Ionization Mass Spectrometry Imaging.
Sylwia A Stopka, Clément Bodineau, Gerard Baquer, Jia-Ren Lin, Md Amin Hossain, Peter K Sorger

Anal Chem· November 2025

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Universal consensus 3D segmentation of cells from 2D segmented stacks.
Felix Y Zhou, Zach Marin, Clarence Yapp, Qiongjing Zou, Benjamin A Nanes, Peter K Sorger

Nat Methods· November 2025

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Melanoma to rhabdomyosarcoma plasticity in the setting of immunotherapy.
Andrew D Knight, Emily J Robitschek, Jia-Ren Lin, Dennie T Frederick, Alvin Shi, Peter Sorger

medRxiv· November 2025

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Highly multiplexed 3D profiling of cell states and immune niches in human tumors.
Clarence Yapp, Ajit J Nirmal, Felix Zhou, Alex Y H Wong, Juliann B Tefft, Peter K Sorger

Nat Methods· October 2025

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Dynamic modelling of cell cycle arrest through integrated single-cell and mathematical modelling approaches.
Javiera Cortés-Ríos, Maria Rodriguez-Fernandez, Peter Karl Sorger, Fabian Fröhlich

PLoS Comput Biol· October 2025

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Immunoprofiling at an Institutional Scale Reveals That High Numbers of Intratumoral CD8 and PD-1 Cells Predict Superior Patient Survival Across Major Cancer Types Independent of Major Risk Factors.
Joao V Alessi, James R Lindsay, Anita Giobbie-Hurder, Bijaya Sharma, Kristen Felt, Peter K Sorger

JCO Precis Oncol· September 2025

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Spatially organized lymphocytic microenvironments in high grade primary prostate tumors.
Ali Amiryousefi, Jeremiah Wala, Jia-Ren Lin, Brian William Labadie, Aishwarya Atmakuri, Peter Sorger

bioRxiv· September 2025

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Comprehensive Proteomics Metadata and Integrative Web Portals Facilitate Sharing and Integration of LINCS Multiomics Data.
Dušica Vidović, Behrouz Shamsaei, Stephan C Schürer, Phillip Kogan, Szymon Chojnacki, Peter K Sorger

Mol Cell Proteomics· July 2025

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SEAL : Spatially-resolved Embedding Analysis with Linked Imaging Data.
Simon Warchol, Grace Guo, Johannes Knittel, Dan Freeman, Usha Bhalla, Peter K Sorger

bioRxiv· July 2025

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Antigen reactivity defines tissue-resident memory and exhausted T cells in tumours.
Thomas N Burn, Jan Schröder, Luke C Gandolfo, Maleika Osman, Elanor N Wainwright, Peter K Sorger

bioRxiv· July 2025

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Corrigendum to "Comprehensive Proteomics Metadata and Integrative Web Portals Facilitate Sharing and Integration of LINCS Multiomics Data".
Dušica Vidović, Behrouz Shamsaei, Stephan C Schürer, Phillip Kogan, Szymon Chojnacki, Peter K Sorger

Mol Cell Proteomics· July 2025

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Resident memory T cell development is gradual and shows AP-1 gene expression in mature cells.
Neal P Smith, Yu Yan, Youdong Pan, Jason B Williams, Kasidet Manakongtreecheep, Peter K Sorger

JCI Insight· June 2025

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Morphology-Aware Profiling of Highly Multiplexed Tissue Images using Variational Autoencoders.
Gregory J Baker, Edward Novikov, Shannon Coy, Yu-An Chen, Clemens B Hug, Peter K Sorger

bioRxiv· June 2025

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Spatial determinants of tumor cell dedifferentiation and plasticity in primary cutaneous melanoma.
Tuulia Vallius, Yingxiao Shi, Edward Novikov, Shishir M Pant, Roxanne Pelletier, Peter K Sorger

bioRxiv· June 2025

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PRAME Expression in Melanoma is Negatively Regulated by TET2-Mediated DNA Hydroxymethylation.
Rui Fang, Tuulia Vallius, Arianna Zhang, Devon Van Cura, Francisco Alicandri, Peter K Sorger

Lab Invest· May 2025

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Comprehensive biobanking strategy with clinical impact at the European Cancer Moonshot Lund Center.
Henriett Oskolas, Fábio C N Nogueira, Gilberto B Domont, Kun-Hsing Yu, Yevgeniy R Semenov, Peter Sorger

J Proteomics· May 2025

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Sharing data from the Human Tumor Atlas Network through standards, infrastructure and community engagement.
Ino de Bruijn, Milen Nikolov, Clarisse Lau, Ashley Clayton, David L Gibbs, Peter K Sorger

Nat Methods· April 2025

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Integrated analysis of transcriptional and metabolic responses to mitochondrial stress.
Liam P Kelley, Song-Hua Hu, Sarah A Boswell, Peter K Sorger, Alison E Ringel

Cell Rep Methods· April 2025

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Multiomic analysis identifies suppressive myeloid cell populations in human TB granulomas.
Neharika Jain, Emmanuel C Ogbonna, Zoltan Maliga, Connor Jacobson, Liang Zhang, Peter K Sorger

bioRxiv· March 2025

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A window-of-opportunity trial reveals mechanisms of response and resistance to navtemadlin in patients with recurrent glioblastoma.
Veronica Rendo, Eudocia Q Lee, Connor Bossi, Nicholas Khuu, Michelle A Rudek, Peter K Sorger

Sci Transl Med· February 2025

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Dynamic Modeling of Cell Cycle Arrest Through Integrated Single-Cell and Mathematical Modelling Approaches.
Javiera Cortés-Ríos, Maria Rodriguez-Fernandez, Peter K Sorger, Fabian Fröhlich

bioRxiv· February 2025

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