Publications by authors named "Peter Stuckey"

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The Vacuolar Protein 8 (Vac8) Homolog in Impacts Stress Responses and Virulence Traits Through Conserved and Unique Roles.
Peter V Stuckey, Julia Marine, Meghan Figueras, Aliyah Collins, Felipe H Santiago-Tirado

J Fungi (Basel)· December 2025

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Lack of an atypical PDR transporter generates an immunogenic strain that drives a dysregulated and lethal immune response in murine lungs.
Christopher J Winski, Peter V Stuckey, Armando M Marrufo, Georgina Agyei, Robbi L Ross

mBio· July 2025

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Lack of an atypical PDR transporter generates an immunogenic strain that drives a dysregulated and lethal immune response in murine lungs.
Christopher J Winski, Peter V Stuckey, Armando M Marrufo, Georgina Agyei, Robbi L Ross

bioRxiv· May 2025

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The vacuolar protein 8 (Vac8) homolog in plays conserved and unique roles in vacuolar and cellular morphology, impacting important stress responses and virulence traits.
Peter V Stuckey, Julia Marine, Meghan Figueras, Aliyah Collins, Felipe H Santiago-Tirado

bioRxiv· May 2025

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Acoustic-to-hyper-spectral: real-time perimeter intrusion detection system monitoring through learnable filters and hyper-spectral image generation from distributed acoustic sensing systems.
Ruth-Emely Pierau, Jim Katsifolis, Alaster Meehan, Hamid Rezatofighi, Peter J Stuckey

Opt Express· February 2025

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PhiSiCal-Checkup: A Bayesian framework to validate amino acid conformations within experimental protein structures.
Piyumi R Amarasinghe, Lloyd Allison, Craig J Morton, Peter J Stuckey, Maria Garcia de la Banda

Proc Natl Acad Sci U S A· January 2025

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Minimal domain peptides derived from enterocins exhibit potent antifungal activity.
Dorrian G Cohen, Theresa M Heidenreich, Jason W Schorey, Jessica N Ross, Daniel E Hammers, Peter V Stuckey

Front Fungal Biol· December 2024

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The catheterized bladder environment induces dysregulation of macrophage polarization exacerbating bacterial UTI.
Armando M Marrufo, Jonathan J Molina, Chris Gager, Marissa J Andersen, Alyssa A LaBella, Peter V Stuckey

bioRxiv· July 2024

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Fungal mechanisms of intracellular survival: what can we learn from bacterial pathogens?
Peter V Stuckey, Felipe H Santiago-Tirado

Infect Immun· September 2023

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Getting 'ϕψχal' with proteins: minimum message length inference of joint distributions of backbone and sidechain dihedral angles.
Piyumi R Amarasinghe, Lloyd Allison, Peter J Stuckey, Maria Garcia de la Banda, Arthur M Lesk

Bioinformatics· June 2023

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The catheterized bladder environment promotes Efg1- and Als1-dependent infection.
Alyssa Ann La Bella, Marissa Jeme Andersen, Nicholas C Gervais, Jonathan Jesus Molina, Alex Molesan, Peter V Stuckey

Sci Adv· March 2023

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Real-time visualization of phagosomal pH manipulation by in an immune signal-dependent way.
Emmanuel J Santiago-Burgos, Peter V Stuckey, Felipe H Santiago-Tirado

Front Cell Infect Microbiol· October 2022

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On the reliability and the limits of inference of amino acid sequence alignments.
Sandun Rajapaksa, Dinithi Sumanaweera, Arthur M Lesk, Lloyd Allison, Peter J Stuckey

Bioinformatics· June 2022

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Universal Architectural Concepts Underlying Protein Folding Patterns.
Arun S Konagurthu, Ramanan Subramanian, Lloyd Allison, David Abramson, Peter J Stuckey

Front Mol Biosci· April 2021

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Computer modeling of a potential agent against SARS-Cov-2 (COVID-19) protease.
Arthur M Lesk, Arun S Konagurthu, Lloyd Allison, Maria Garcia de la Banda, Peter J Stuckey

Proteins· December 2020

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Information-Theoretic Inference of an Optimal Dictionary of Protein Supersecondary Structures.
Arun S Konagurthu, Ramanan Subramanian, Lloyd Allison, David Abramson, Maria Garcia de la Banda, Peter J Stuckey

Methods Mol Biol· July 2019

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Statistical inference of protein structural alignments using information and compression.
James H Collier, Lloyd Allison, Arthur M Lesk, Peter J Stuckey, Maria Garcia de la Banda

Bioinformatics· April 2017

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How precise are reported protein coordinate data?
Arun S Konagurthu, Lloyd Allison, David Abramson, Peter J Stuckey, Arthur M Lesk

Acta Crystallogr D Biol Crystallogr· March 2014

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Discovery and analysis of consistent active sub-networks in cancers.
Raj K Gaire, Lorey Smith, Patrick Humbert, James Bailey, Peter J Stuckey

BMC Bioinformatics· September 2013

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Automatic generation of protein structure cartoons with Pro-origami.
Alex Stivala, Michael Wybrow, Anthony Wirth, James C Whisstock, Peter J Stuckey

Bioinformatics· December 2011

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Piecewise linear approximation of protein structures using the principle of minimum message length.
Arun S Konagurthu, Lloyd Allison, Peter J Stuckey, Arthur M Lesk

Bioinformatics· July 2011

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Fast and accurate protein substructure searching with simulated annealing and GPUs.
Alex D Stivala, Peter J Stuckey, Anthony I Wirth

BMC Bioinformatics· September 2010

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MUSTANG-MR structural sieving server: applications in protein structural analysis and crystallography.
Arun S Konagurthu, Cyril F Reboul, Jason W Schmidberger, James A Irving, Arthur M Lesk, Peter J Stuckey

PLoS One· April 2010

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MIRAGAA--a methodology for finding coordinated effects of microRNA expression changes and genome aberrations in cancer.
Raj K Gaire, James Bailey, Jennifer Bearfoot, Ian G Campbell, Peter J Stuckey

Bioinformatics· January 2010

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Tableau-based protein substructure search using quadratic programming.
Alex Stivala, Anthony Wirth, Peter J Stuckey

BMC Bioinformatics· May 2009

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