Publications by authors named "Peter Woolf"

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A Nonadaptive Combinatorial Group Testing Strategy to Facilitate Health Care Worker Screening during the Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) Outbreak.
John H McDermott, Duncan Stoddard, Peter J Woolf, Jamie M Ellingford, David Gokhale

J Mol Diagn· May 2021

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Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
Marissa Simon, Angela Bruex, Raghunandan M Kainkaryam, Xiaohua Zheng, Ling Huang, Peter J Woolf

Plant Cell· September 2013

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Smart pooling of mRNA samples for efficient transcript profiling.
Raghunandan M Kainkaryam, Angela Bruex, Peter J Woolf, John Schiefelbein

Methods Mol Biol· September 2012

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The transcription factor osterix (SP7) regulates BMP6-induced human osteoblast differentiation.
Fengchang Zhu, Michael S Friedman, Weijun Luo, Peter Woolf, Kurt D Hankenson

J Cell Physiol· June 2012

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A gene regulatory network for root epidermis cell differentiation in Arabidopsis.
Angela Bruex, Raghunandan M Kainkaryam, Yana Wieckowski, Yeon Hee Kang, Christine Bernhardt, Peter J Woolf

PLoS Genet· January 2012

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Temporal dynamics of host molecular responses differentiate symptomatic and asymptomatic influenza a infection.
Yongsheng Huang, Aimee K Zaas, Arvind Rao, Nicolas Dobigeon, Peter J Woolf

PLoS Genet· August 2011

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RegNetB: predicting relevant regulator-gene relationships in localized prostate tumor samples.
Angel Alvarez, Peter J Woolf

BMC Bioinformatics· June 2011

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Time series gene expression profiling and temporal regulatory pathway analysis of BMP6 induced osteoblast differentiation and mineralization.
Weijun Luo, Michael S Friedman, Kurt D Hankenson, Peter J Woolf

BMC Syst Biol· May 2011

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Partially observed bipartite network analysis to identify predictive connections in transcriptional regulatory networks.
Angel Alvarez, Peter J Woolf

BMC Syst Biol· May 2011

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vProtein: identifying optimal amino acid complements from plant-based foods.
Peter J Woolf, Leeann L Fu, Avik Basu

PLoS One· April 2011

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Reconstructing transcriptional regulatory networks using three-way mutual information and Bayesian networks.
Weijun Luo, Peter J Woolf

Methods Mol Biol· December 2010

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BN+1 Bayesian network expansion for identifying molecular pathway elements.
Andrew P Hodges, Peter Woolf, Yongqun He

Commun Integr Biol· November 2010

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A mechanistic model of PCR for accurate quantification of quantitative PCR data.
Gregory J Boggy, Peter J Woolf

PLoS One· August 2010

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poolMC: smart pooling of mRNA samples in microarray experiments.
Raghunandan M Kainkaryam, Angela Bruex, Anna C Gilbert, John Schiefelbein, Peter J Woolf

BMC Bioinformatics· June 2010

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Bayesian network expansion identifies new ROS and biofilm regulators.
Andrew P Hodges, Dongjuan Dai, Zuoshuang Xiang, Peter Woolf, Chuanwu Xi

PLoS One· March 2010

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A computational approach to inferring cellular protein-binding affinities from quantitative fluorescence resonance energy transfer imaging.
Khamir Mehta, Adam D Hoppe, Raghunandan Kainkaryam, Peter J Woolf, Jennifer J Linderman

Proteomics· December 2009

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Using mechanistic Bayesian networks to identify downstream targets of the sonic hedgehog pathway.
Abhik Shah, Toyoaki Tenzen, Andrew P McMahon, Peter J Woolf

BMC Bioinformatics· December 2009

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Python Environment for Bayesian Learning: Inferring the Structure of Bayesian Networks from Knowledge and Data.
Abhik Shah, Peter Woolf

J Mach Learn Res· June 2009

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Pooling in high-throughput drug screening.
Raghunandan M Kainkaryam, Peter J Woolf

Curr Opin Drug Discov Devel· May 2009

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GAGE: generally applicable gene set enrichment for pathway analysis.
Weijun Luo, Michael S Friedman, Kerby Shedden, Kurt D Hankenson, Peter J Woolf

BMC Bioinformatics· May 2009

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Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information.
Weijun Luo, Kurt D Hankenson, Peter J Woolf

BMC Bioinformatics· November 2008

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Using two-component systems and other bacterial regulatory factors for the fabrication of synthetic genetic devices.
Alexander J Ninfa, Stephen Selinsky, Nicolas Perry, Stephen Atkins, Qi Xiu Song, Peter Woolf

Methods Enzymol· May 2008

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poolHiTS: a shifted transversal design based pooling strategy for high-throughput drug screening.
Raghunandan M Kainkaryam, Peter J Woolf

BMC Bioinformatics· May 2008

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A cheminformatic toolkit for mining biomedical knowledge.
Gus R Rosania, Gordon Crippen, Peter Woolf, David States, Kerby Shedden

Pharm Res· October 2007

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miniTUBA: medical inference by network integration of temporal data using Bayesian analysis.
Zuoshuang Xiang, Rebecca M Minter, Xiaoming Bi, Peter J Woolf, Yongqun He

Bioinformatics· September 2007

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