Publications by authors named "Philip D Blood"

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Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usage.
Katy Börner, Philip D Blood, Jonathan C Silverstein, Matthew Ruffalo, Rahul Satija

Nat Methods· April 2025

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Playbook workflow builder: Interactive construction of bioinformatics workflows.
Daniel J B Clarke, John Erol Evangelista, Zhuorui Xie, Giacomo B Marino, Anna I Byrd, Philip D Blood

PLoS Comput Biol· April 2025

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Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage.
Katy Börner, Philip D Blood, Jonathan C Silverstein, Matthew Ruffalo, Rahul Satija

bioRxiv· August 2024

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Raw pacific biosciences and illumina sequencing reads and assembled genome data for the cattle ticks and .
Felix D Guerrero, Noushin Ghaffari, Kylie G Bendele, Richard P Metz, C Michael Dickens, Philip D Blood

Data Brief· April 2021

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The Pacific Biosciences assembled genome dataset from a parthenogenetic New Zealand wild population of the longhorned tick, Neumann, 1901.
Felix D Guerrero, Kylie G Bendele, Noushin Ghaffari, Joseph Guhlin, Kristene R Gedye, Philip D Blood

Data Brief· December 2019

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Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.
Alexander Sczyrba, Peter Hofmann, Peter Belmann, David Koslicki, Stefan Janssen, Philip D Blood

Nat Methods· November 2017

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TCGA Expedition: A Data Acquisition and Management System for TCGA Data.
Uma R Chandran, Olga P Medvedeva, M Michael Barmada, Philip D Blood, Anish Chakka

PLoS One· June 2017

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Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture.
Noushin Ghaffari, Alejandro Sanchez-Flores, Ryan Doan, Karina D Garcia-Orozco, Patricia L Chen, Philip D Blood

Sci Rep· November 2014

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Enabling large-scale next-generation sequence assembly with Blacklight.
M Brian Couger, Lenore Pipes, Fabio Squina, Rolf Prade, Adam Siepel, Philip D Blood

Concurr Comput· September 2014

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Leveraging the national cyberinfrastructure for biomedical research.
Richard LeDuc, Matthew Vaughn, John M Fonner, Michael Sullivan, James G Williams, Philip D Blood

J Am Med Inform Assoc· May 2014

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De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.
Brian J Haas, Alexie Papanicolaou, Moran Yassour, Manfred Grabherr, Philip D Blood

Nat Protoc· August 2013

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Factors influencing local membrane curvature induction by N-BAR domains as revealed by molecular dynamics simulations.
Philip D Blood, Richard D Swenson, Gregory A Voth

Biophys J· August 2008

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Membrane remodeling from N-BAR domain interactions: insights from multi-scale simulation.
Gary S Ayton, Philip D Blood, Gregory A Voth

Biophys J· May 2007

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Direct observation of Bin/amphiphysin/Rvs (BAR) domain-induced membrane curvature by means of molecular dynamics simulations.
Philip D Blood, Gregory A Voth

Proc Natl Acad Sci U S A· October 2006

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Probing the molecular-scale lipid bilayer response to shear flow using nonequilibrium molecular dynamics.
Philip D Blood, Gary S Ayton, Gregory A Voth

J Phys Chem B· October 2005

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