Publications by authors named "Manfred Grabherr"

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MysteryMaster: scraping the bottom of the barrel of barcoded Oxford nanopore reads.
Abdolrahman Khezri, Sverre Branders, Anurag Basavaraj Bellankimath, Jawad Ali, Crystal Chapagain, Manfred G Grabherr

BMC Bioinformatics· October 2025

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Tracing human genetic histories and natural selection with precise local ancestry inference.
Jon Lerga-Jaso, Biljana Novković, Deepu Unnikrishnan, Varuna Bamunusinghe, Marcelinus R Hatorangan, Manfred G Grabherr

Nat Commun· May 2025

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: Unsupervised Classification of Electroencephalographic Data.
Salvador Daniel Rivas-Carrillo, Evgeny E Akkuratov, Hector Valdez Ruvalcaba, Angel Vargas-Sanchez, Jan Komorowski, Manfred G Grabherr

Sensors (Basel)· March 2023

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SumStatsRehab: an efficient algorithm for GWAS summary statistics assessment and restoration.
Mykyta Matushyn, Madhuchanda Bose, Abdallah Amr Mahmoud, Lewis Cuthbertson, Carlos Tello, Manfred G Grabherr

BMC Bioinformatics· October 2022

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Metatranscriptomics captures dynamic shifts in mycorrhizal coordination in boreal forests.
Simon R Law, Alonso R Serrano, Yohann Daguerre, John Sundh, Andreas N Schneider, Manfred Grabherr

Proc Natl Acad Sci U S A· June 2022

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Flexible Machine Learning Algorithms for Clinical Gait Assessment Tools.
Christian Greve, Hobey Tam, Manfred Grabherr, Aditya Ramesh, Bart Scheerder

Sensors (Basel)· June 2022

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EZTraits: A programmable tool to evaluate multi-site deterministic traits.
Matt Carland, Haley Pedersen, Madhuchanda Bose, Biljana Novković, Charles Manson, Manfred G Grabherr

PLoS One· May 2022

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Comparative Fungal Community Analyses Using Metatranscriptomics and Internal Transcribed Spacer Amplicon Sequencing from Norway Spruce.
Andreas N Schneider, John Sundh, Görel Sundström, Kerstin Richau, Nicolas Delhomme, Manfred Grabherr

mSystems· February 2021

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Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei.
Merce Montoliu-Nerin, Marisol Sánchez-García, Claudia Bergin, Manfred Grabherr, Barbara Ellis

Sci Rep· January 2020

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Investigation of the host transcriptional response to intracellular bacterial infection using Dictyostelium discoideum as a host model.
Jonas Kjellin, Maria Pränting, Frauke Bach, Roshan Vaid, Bart Edelbroek, Manfred Grabherr

BMC Genomics· December 2019

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Author Correction: Intra- and inter-individual metabolic profiling highlights carnitine and lysophosphatidylcholine pathways as key molecular defects in type 2 diabetes.
Klev Diamanti, Marco Cavalli, Gang Pan, Maria J Pereira, Chanchal Kumar, Manfred Grabherr

Sci Rep· November 2019

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Analyzing DNA methylation patterns in subjects diagnosed with schizophrenia using machine learning methods.
Behrooz Torabi Moghadam, Mitra Etemadikhah, Grazyna Rajkowska, Craig Stockmeier, Manfred Grabherr

J Psychiatr Res· July 2019

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Intra- and inter-individual metabolic profiling highlights carnitine and lysophosphatidylcholine pathways as key molecular defects in type 2 diabetes.
Klev Diamanti, Marco Cavalli, Gang Pan, Maria J Pereira, Chanchal Kumar, Manfred Grabherr

Sci Rep· July 2019

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Global characterization of the Dicer-like protein DrnB roles in miRNA biogenesis in the social amoeba Dictyostelium discoideum.
Zhen Liao, Jonas Kjellin, Marc P Hoeppner, Manfred Grabherr, Fredrik Söderbom

RNA Biol· December 2018

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ACES: a machine learning toolbox for clustering analysis and visualization.
Jiangning Gao, Görel Sundström, Behrooz Torabi Moghadam, Neda Zamani, Manfred G Grabherr

BMC Genomics· December 2018

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Functional and evolutionary genomic inferences in through genome and population sequencing of American and European aspen.
Yao-Cheng Lin, Jing Wang, Nicolas Delhomme, Bastian Schiffthaler, Görel Sundström, Manfred Grabherr

Proc Natl Acad Sci U S A· November 2018

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Special Issue Introduction: The Wonders and Mysteries Next Generation Sequencing Technologies Help Reveal.
Manfred G Grabherr, Bozena Kaminska, Jan Komorowski

Genes (Basel)· October 2018

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Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction.
Susanne Bornelöv, Eyal Seroussi, Sara Yosefi, Sharon Benjamini, Shoval Miyara, Manfred Grabherr

BMC Genomics· April 2018

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Characterization of the Giardia intestinalis secretome during interaction with human intestinal epithelial cells: The impact on host cells.
Showgy Y Ma'ayeh, Jingyi Liu, Dimitra Peirasmaki, Katarina Hörnaeus, Sara Bergström Lind, Manfred Grabherr

PLoS Negl Trop Dis· December 2017

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Reading and editing the Pleurodeles waltl genome reveals novel features of tetrapod regeneration.
Ahmed Elewa, Heng Wang, Carlos Talavera-López, Alberto Joven, Gonçalo Brito, Manfred Grabherr

Nat Commun· December 2017

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RNA-sequence data normalization through in silico prediction of reference genes: the bacterial response to DNA damage as case study.
Bork A Berghoff, Torgny Karlsson, Thomas Källman, E Gerhart H Wagner, Manfred G Grabherr

BioData Min· September 2017

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A practical guide to build assemblies for single tissues of non-model organisms: the example of a Neotropical frog.
Santiago Montero-Mendieta, Manfred Grabherr, Henrik Lantz, Ignacio De la Riva, Jennifer A Leonard

PeerJ· September 2017

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PiiL: visualization of DNA methylation and gene expression data in gene pathways.
Behrooz Torabi Moghadam, Neda Zamani, Jan Komorowski, Manfred Grabherr

BMC Genomics· August 2017

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Evolution of the p53-MDM2 pathway.
Emma Åberg, Fulvio Saccoccia, Manfred Grabherr, Wai Ying Josefin Ore, Per Jemth

BMC Evol Biol· August 2017

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Correspondence on Lovell et al.: identification of chicken genes previously assumed to be evolutionarily lost.
Susanne Bornelöv, Eyal Seroussi, Sara Yosefi, Ken Pendavis, Shane C Burgess, Manfred Grabherr

Genome Biol· June 2017

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