Publications by authors named "Pierre Neuvial"

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The dependence of the amino acid backbone conformation on the translated synonymous codon is not statistically significant.
Javier González-Delgado, Pablo Mier, Pau Bernadó, Pierre Neuvial, Juan Cortés

Proc Natl Acad Sci U S A· June 2025

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A comprehensive review and benchmark of differential analysis tools for Hi-C data.
Elise Jorge, Sylvain Foissac, Pierre Neuvial, Matthias Zytnicki, Nathalie Vialaneix

Brief Bioinform· March 2025

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Weighted families of contact maps to characterize conformational ensembles of (highly-)flexible proteins.
Javier González-Delgado, Pau Bernadó, Pierre Neuvial, Juan Cortés

Bioinformatics· November 2024

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WASCO: A Wasserstein-based Statistical Tool to Compare Conformational Ensembles of Intrinsically Disordered Proteins.
Javier González-Delgado, Amin Sagar, Christophe Zanon, Kresten Lindorff-Larsen, Pau Bernadó, Pierre Neuvial

J Mol Biol· July 2023

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Statistical proofs of the interdependence between nearest neighbor effects on polypeptide backbone conformations.
Javier González-Delgado, Pau Bernadó, Pierre Neuvial, Juan Cortés

J Struct Biol· December 2022

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Powerful and interpretable control of false discoveries in two-group differential expression studies.
Nicolas Enjalbert-Courrech, Pierre Neuvial

Bioinformatics· November 2022

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Notip: Non-parametric true discovery proportion control for brain imaging.
Alexandre Blain, Bertrand Thirion, Pierre Neuvial

Neuroimage· October 2022

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Identification of deregulation mechanisms specific to cancer subtypes.
Magali Champion, Julien Chiquet, Pierre Neuvial, Mohamed Elati, François Radvanyi

J Bioinform Comput Biol· February 2021

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Single-Cell Virtual Cytometer allows user-friendly and versatile analysis and visualization of multimodal single cell RNAseq datasets.
Frédéric Pont, Marie Tosolini, Qing Gao, Marion Perrier, Miguel Madrid-Mencía, Pierre Neuvial

NAR Genom Bioinform· June 2020

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Adjacency-constrained hierarchical clustering of a band similarity matrix with application to genomics.
Christophe Ambroise, Alia Dehman, Pierre Neuvial, Guillem Rigaill, Nathalie Vialaneix

Algorithms Mol Biol· November 2019

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Author Correction: New insight for pharmacogenomics studies from the transcriptional analysis of two large-scale cancer cell line panels.
Benjamin Sadacca, Anne-Sophie Hamy, Cécile Laurent, Pierre Gestraud, Hélène Bonsang-Kitzis, Pierre Neuvial

Sci Rep· December 2018

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New insight for pharmacogenomics studies from the transcriptional analysis of two large-scale cancer cell line panels.
Benjamin Sadacca, Anne-Sophie Hamy, Cécile Laurent, Pierre Gestraud, Hélène Bonsang-Kitzis, Pierre Neuvial

Sci Rep· November 2017

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A model for gene deregulation detection using expression data.
Thomas Picchetti, Julien Chiquet, Mohamed Elati, Pierre Neuvial, Rémy Nicolle

BMC Syst Biol· September 2016

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tmle.npvi: targeted, integrative search of associations between DNA copy number and gene expression, accounting for DNA methylation.
Antoine Chambaz, Pierre Neuvial

Bioinformatics· September 2015

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Performance evaluation of DNA copy number segmentation methods.
Morgane Pierre-Jean, Guillem Rigaill, Pierre Neuvial

Brief Bioinform· July 2015

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Performance of a blockwise approach in variable selection using linkage disequilibrium information.
Alia Dehman, Christophe Ambroise, Pierre Neuvial

BMC Bioinformatics· May 2015

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Stability-based comparison of class discovery methods for DNA copy number profiles.
Isabel Brito, Philippe Hupé, Pierre Neuvial, Emmanuel Barillot

PLoS One· March 2015

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CalMaTe: a method and software to improve allele-specific copy number of SNP arrays for downstream segmentation.
Maria Ortiz-Estevez, Ander Aramburu, Henrik Bengtsson, Pierre Neuvial, Angel Rubio

Bioinformatics· July 2012

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Subtype and pathway specific responses to anticancer compounds in breast cancer.
Laura M Heiser, Anguraj Sadanandam, Wen-Lin Kuo, Stephen C Benz, Theodore C Goldstein, Pierre Neuvial

Proc Natl Acad Sci U S A· February 2012

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Estimation of a non-parametric variable importance measure of a continuous exposure.
Antoine Chambaz, Pierre Neuvial, Mark J van der Laan

Electron J Stat· January 2012

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Parent-specific copy number in paired tumor-normal studies using circular binary segmentation.
Adam B Olshen, Henrik Bengtsson, Pierre Neuvial, Paul T Spellman, Richard A Olshen

Bioinformatics· August 2011

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Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma.
Houtan Noushmehr, Daniel J Weisenberger, Kristin Diefes, Heidi S Phillips, Kanan Pujara, Pierre Neuvial

Cancer Cell· May 2010

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TumorBoost: normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays.
Henrik Bengtsson, Pierre Neuvial, Terence P Speed

BMC Bioinformatics· May 2010

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High-resolution mapping of DNA breakpoints to define true recurrences among ipsilateral breast cancers.
Marc A Bollet, Nicolas Servant, Pierre Neuvial, Charles Decraene, Ingrid Lebigot

J Natl Cancer Inst· January 2008

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LICORN: learning cooperative regulation networks from gene expression data.
Mohamed Elati, Pierre Neuvial, Monique Bolotin-Fukuhara, Emmanuel Barillot, François Radvanyi

Bioinformatics· September 2007

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