Publications by authors named "Pierre Salvy"

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Reconstructing Kinetic Models for Dynamical Studies of Metabolism using Generative Adversarial Networks.
Subham Choudhury, Michael Moret, Pierre Salvy, Daniel Weilandt, Vassily Hatzimanikatis, Ljubisa Miskovic

Nat Mach Intell· August 2022

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Symbolic kinetic models in python (SKiMpy): intuitive modeling of large-scale biological kinetic models.
Daniel R Weilandt, Pierre Salvy, Maria Masid, Georgios Fengos, Robin Denhardt-Erikson

Bioinformatics· January 2023

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A genome-scale metabolic model of Saccharomyces cerevisiae that integrates expression constraints and reaction thermodynamics.
Omid Oftadeh, Pierre Salvy, Maria Masid, Maxime Curvat, Ljubisa Miskovic

Nat Commun· August 2021

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Emergence of diauxie as an optimal growth strategy under resource allocation constraints in cellular metabolism.
Pierre Salvy, Vassily Hatzimanikatis

Proc Natl Acad Sci U S A· February 2021

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The ETFL formulation allows multi-omics integration in thermodynamics-compliant metabolism and expression models.
Pierre Salvy, Vassily Hatzimanikatis

Nat Commun· January 2020

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pyTFA and matTFA: a Python package and a Matlab toolbox for Thermodynamics-based Flux Analysis.
Pierre Salvy, Georgios Fengos, Meric Ataman, Thomas Pathier, Keng C Soh

Bioinformatics· January 2019

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