Publications by authors named "Georgios Fengos"

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Symbolic kinetic models in python (SKiMpy): intuitive modeling of large-scale biological kinetic models.
Daniel R Weilandt, Pierre Salvy, Maria Masid, Georgios Fengos, Robin Denhardt-Erikson

Bioinformatics· January 2023

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The effects of model complexity and size on metabolic flux distribution and control: case study in Escherichia coli.
Tuure Hameri, Georgios Fengos, Vassily Hatzimanikatis

BMC Bioinformatics· March 2021

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Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing.
Christian Lieven, Moritz E Beber, Brett G Olivier, Frank T Bergmann, Meric Ataman, Georgios Fengos

Nat Biotechnol· April 2020

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MEMOTE for standardized genome-scale metabolic model testing.
Christian Lieven, Moritz E Beber, Brett G Olivier, Frank T Bergmann, Meric Ataman, Georgios Fengos

Nat Biotechnol· March 2020

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Kinetic models of metabolism that consider alternative steady-state solutions of intracellular fluxes and concentrations.
Tuure Hameri, Georgios Fengos, Meric Ataman, Ljubisa Miskovic, Vassily Hatzimanikatis

Metab Eng· March 2019

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pyTFA and matTFA: a Python package and a Matlab toolbox for Thermodynamics-based Flux Analysis.
Pierre Salvy, Georgios Fengos, Meric Ataman, Thomas Pathier, Keng C Soh

Bioinformatics· January 2019

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redGEM: Systematic reduction and analysis of genome-scale metabolic reconstructions for development of consistent core metabolic models.
Meric Ataman, Daniel F Hernandez Gardiol, Georgios Fengos, Vassily Hatzimanikatis

PLoS Comput Biol· July 2017

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Rites of passage: requirements and standards for building kinetic models of metabolic phenotypes.
Ljubisa Miskovic, Milenko Tokic, Georgios Fengos, Vassily Hatzimanikatis

Curr Opin Biotechnol· December 2015

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Spatial proteomic and phospho-proteomic organization in three prototypical cell migration modes.
Georgios Fengos, Alexander Schmidt, Katrin Martin, Erika Fluri, Ruedi Aebersold

Proteome Sci· July 2014

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Predictive models for cellular signaling networks.
Dagmar Iber, Georgios Fengos

Methods Mol Biol· November 2013

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Analyzing and constraining signaling networks: parameter estimation for the user.
Florian Geier, Georgios Fengos, Federico Felizzi, Dagmar Iber

Methods Mol Biol· November 2013

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Prediction stability in a data-based, mechanistic model of σF regulation during sporulation in Bacillus subtilis.
Georgios Fengos, Dagmar Iber

Sci Rep· September 2013

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A computational analysis of the dynamic roles of talin, Dok1, and PIPKI for integrin activation.
Florian Geier, Georgios Fengos, Dagmar Iber

PLoS One· March 2012

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Plasticity of TGF-β signaling.
Geraldine Cellière, Georgios Fengos, Marianne Hervé, Dagmar Iber

BMC Syst Biol· November 2011

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