Publications by authors named "Prem Chapagain"

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Lasso Peptide Syanodin I: Loop-Pulling Two-Step Thermal Unthreading Mechanism.
Miguel Santos-Fernandez, Kevin Jeanne Dit Fouque, Ukesh Karki, Alain Blond, Séverine Zirah, Prem P Chapagain

Anal Chem· November 2025

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Variants of the Ebola virus matrix protein VP40 have differential effects on oligomerization and plasma membrane interactions.
Balindile B Motsa, Barsha Bhowal, Yogesh B Narkhede, Ukesh Karki, Valentina Toro Ramirez, Prem P Chapagain

J Biol Chem· September 2025

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Unscheduled mA Deposition in RNA via mATP Incorporation by DNA Polymerases.
Fei Qu, Jeanpierre Fuente, Prem Chapagain, Yuan Liu

Int J Mol Sci· September 2025

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The Multifaceted Role of miR-211 in Health and Disease.
Juan Rayo Parra, Zachary Grand, Gabriel Gonzalez, Ranjan Perera, Dipendra Pandeya, Prem Chapagain

Biomolecules· August 2025

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Design of a stapled peptide that binds to the Ebola virus matrix protein dimer interface.
Roopashi Saxena, Madison M Wright, Benjamin M Rathman, Ukesh Karki, Prem P Chapagain

RSC Chem Biol· June 2025

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Mapping the Interactions Among Class IIa Histone Deacetylases and Myocyte Enhancer Factor 2s.
Narayan Gautam, Sophia Wang, Aykut Üren, Prem P Chapagain, Narayan P Adhikari

J Chem Inf Model· June 2025

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Interplay of hypoxia, immune dysregulation, and metabolic stress in pathophysiology of type 1 diabetes.
Rahul Mittal, Joana R N Lemos, Prem Chapagain, Khemraj Hirani

Front Immunol· June 2025

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Substituted Triazole-3,5-Diamine Compounds as Novel Human Topoisomerase III Beta Inhibitors.
Yasir Mamun, Somaia Haque Chadni, Ramanjaneyulu Rayala, Hasham Shafi, Shomita Ferdous, Prem Chapagain

Int J Mol Sci· June 2025

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Tables Turned─Structural Mechanisms of Target-Induced miRNA Destabilization.
Ukesh Karki, Prem Chapagain

J Phys Chem B· May 2025

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Identification of novel human topoisomerase III beta inhibitors.
Yasir Mamun, Somaia Haque Chadni, Ramanjaneyulu Rayala, Shomita Ferdous, Rudramani Pokhrel, Prem Chapagain

bioRxiv· March 2025

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Substrate binding of human and bacterial type IA topoisomerase: An experimentation with AlphaFold 3.0.
Yasir Mamun, Ally Aguado, Ana Preza, Abhilasha Kadel, Anjani Mogallur, Prem Chapagain

Comput Struct Biotechnol J· March 2025

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A comprehensive survey of scoring functions for protein docking models.
Azam Shirali, Vitalii Stebliankin, Ukesh Karki, Jimeng Shi, Prem Chapagain

BMC Bioinformatics· January 2025

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Inhibition of HMGA2 binding to AT-rich DNA by its negatively charged C-terminus.
Linjia Su, Zifang Deng, Miguel Santos-Fernandez, Kevin Jeanne Dit Fouque, Prem P Chapagain

Nucleic Acids Res· January 2025

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Characterization of molecular interactions between HDAC7 and MEF2A.
Narayan Gautam, Prem P Chapagain, Narayan P Adhikari, Purushottam B Tiwari

J Biomol Struct Dyn· December 2024

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Ebola Virus Matrix Protein VP40 Single Mutations G198R and G201R Significantly Enhance Plasma Membrane Localization.
Michael D Cioffi, Tej Sharma, Balindile B Motsa, Nisha Bhattarai, Bernard S Gerstman, Prem P Chapagain

J Phys Chem B· November 2024

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The Role of Protonation in the PfMATE Transporter Protein Structural Transitions.
Md Lokman Hossen, Nisha Bhattarai, Prem P Chapagain, Bernard S Gerstman

Methods Mol Biol· November 2024

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Simulation-Guided Molecular Modeling of Nisin and Lipid II Assembly and Membrane Pore Formation.
Hugo A Perez, Zhe Wang, Bernard S Gerstman, Jin He, Prem P Chapagain

J Chem Inf Model· October 2024

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Insights into the DNA and RNA Interactions of Human Topoisomerase III Beta Using Molecular Dynamics Simulations.
Yasir Mamun, Yuk-Ching Tse-Dinh, Prem Chapagain

J Chem Inf Model· August 2024

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Structure-Activity Relationship of Pyrrolidine Pentamine Derivatives as Inhibitors of the Aminoglycoside 6'--Acetyltransferase Type Ib.
Jan Sklenicka, Tung Tran, Maria S Ramirez, Haley M Donow, Angel J Magaña, Prem Chapagain

Antibiotics (Basel)· July 2024

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Minor electrostatic changes robustly increase VP40 membrane binding, assembly, and budding of Ebola virus matrix protein derived virus-like particles.
Balindile B Motsa, Tej Sharma, Michael D Cioffi, Prem P Chapagain, Robert V Stahelin

J Biol Chem· May 2024

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Computational and experimental identification of keystone interactions in Ebola virus matrix protein VP40 dimer formation.
Yogesh Narkhede, Roopashi Saxena, Tej Sharma, Jacob P Conarty, Valentina Toro Ramirez, Prem P Chapagain

Protein Sci· May 2024

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The natural history and genotype-phenotype correlations of TMPRSS3 hearing loss: an international, multi-center, cohort analysis.
Brett M Colbert, Cris Lanting, Molly Smeal, Susan Blanton, Derek M Dykxhoorn, Prem Chapagain

Hum Genet· May 2024

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Structure-activity relationship of pyrrolidine pentamine derivatives as inhibitors of the aminoglycoside 6'- -acetyltransferase type Ib.
Jan Sklenicka, Tung Tran, Maria S Ramirez, Haley M Donow, Angel J Magaña, Prem Chapagain

bioRxiv· May 2024

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Role of phosphatidic acid lipids on plasma membrane association of the Ebola virus matrix protein VP40.
Michael D Cioffi, Monica L Husby, Bernard S Gerstman, Robert V Stahelin, Prem P Chapagain

Biochim Biophys Acta Mol Cell Biol Lipids· April 2024

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Minor changes in electrostatics robustly increase VP40 membrane binding, assembly, and budding of Ebola virus matrix protein derived virus-like particles.
Balindile B Motsa, Tej Sharma, Prem P Chapagain, Robert V Stahelin

bioRxiv· January 2024

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