Publications by authors named "Randy Berka"

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Draft genome sequence of a monokaryotic model brown-rot fungus SB12.
Jill Gaskell, Phil Kersten, Luis F Larrondo, Paulo Canessa, Diego Martinez, Randy Berka

Genom Data· December 2017

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From the Lab to the Farm: An Industrial Perspective of Plant Beneficial Microorganisms.
J Jacob Parnell, Randy Berka, Hugh A Young, Joseph M Sturino, Yaowei Kang

Front Plant Sci· August 2016

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Genetics of mating in members of the Chaetomiaceae as revealed by experimental and genomic characterization of reproduction in Myceliophthora heterothallica.
Miriam I Hutchinson, Amy J Powell, Adrian Tsang, Nicholas O'Toole, Randy M Berka

Fungal Genet Biol· January 2016

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Analysis of the Phlebiopsis gigantea genome, transcriptome and secretome provides insight into its pioneer colonization strategies of wood.
Chiaki Hori, Takuya Ishida, Kiyohiko Igarashi, Masahiro Samejima, Hitoshi Suzuki, Randy M Berka

PLoS Genet· December 2014

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Metabolic engineering of Aspergillus oryzae NRRL 3488 for increased production of L-malic acid.
Stephen H Brown, Lena Bashkirova, Randy Berka, Tyler Chandler, Tammy Doty

Appl Microbiol Biotechnol· October 2013

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Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis.
Elena Fernandez-Fueyo, Francisco J Ruiz-Dueñas, Patricia Ferreira, Dimitrios Floudas, David S Hibbett, Randy M Berka

Proc Natl Acad Sci U S A· April 2012

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Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris.
Randy M Berka, Igor V Grigoriev, Robert Otillar, Asaf Salamov, Jane Grimwood

Nat Biotechnol· October 2011

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Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88.
Mikael R Andersen, Margarita P Salazar, Peter J Schaap, Peter J I van de Vondervoort, David Culley, Randy M Berka

Genome Res· June 2011

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Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing.
Stéphane Le Crom, Wendy Schackwitz, Len Pennacchio, Jon K Magnuson, David E Culley, Randy Berka

Proc Natl Acad Sci U S A· September 2009

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Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion.
Diego Martinez, Jean Challacombe, Ingo Morgenstern, David Hibbett, Monika Schmoll, Randy Berka

Proc Natl Acad Sci U S A· February 2009

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Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina).
Diego Martinez, Randy M Berka, Bernard Henrissat, Markku Saloheimo, Mikko Arvas

Nat Biotechnol· May 2008

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Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species.
Michael W Rey, Preethi Ramaiya, Beth A Nelson, Shari D Brody-Karpin, Elizabeth J Zaretsky, Randy M Berka

Genome Biol· July 2005

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Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78.
Diego Martinez, Luis F Larrondo, Nik Putnam, Maarten D Sollewijn Gelpke, Katherine Huang, Randy Berka

Nat Biotechnol· June 2004

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Genomewide transcriptional changes associated with genetic alterations and nutritional supplementation affecting tryptophan metabolism in Bacillus subtilis.
Randy M Berka, Xianju Cui, Charles Yanofsky

Proc Natl Acad Sci U S A· May 2003

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A new non-linear normalization method for reducing variability in DNA microarray experiments.
Christopher Workman, Lars Juhl Jensen, Hanne Jarmer, Randy Berka, Laurent Gautier

Genome Biol· August 2002

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Microarray analysis of the Bacillus subtilis K-state: genome-wide expression changes dependent on ComK.
Randy M Berka, Jeanette Hahn, Mark Albano, Irena Draskovic, Marjan Persuh

Mol Microbiol· March 2002

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Transcriptome analysis documents induced competence of Bacillus subtilis during nitrogen limiting conditions.
Hanne Jarmer, Randy Berka, Steen Knudsen, Hans H Saxild

FEMS Microbiol Lett· January 2002

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