Publications by authors named "Raphael Chaleil"

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Author Correction: Characterisation of a cyclic peptide that binds to the RAS binding domain of phosphoinositide 3-kinase p110α.
Mohamed Ismail, Stephen R Martin, Roger George, Francesca Houghton, Geoff Kelly, Raphaël A G Chaleil

Sci Rep· March 2025

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Interplay of adherens junctions and matrix proteolysis determines the invasive pattern and growth of squamous cell carcinoma.
Takuya Kato, Robert P Jenkins, Stefanie Derzsi, Melda Tozluoglu, Antonio Rullan, Raphaël A G Chaleil

Elife· March 2023

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Characterisation of a cyclic peptide that binds to the RAS binding domain of phosphoinositide 3-kinase p110α.
Mohamed Ismail, Stephen R Martin, Roger George, Francesca Houghton, Geoff Kelly, Raphaël A G Chaleil

Sci Rep· February 2023

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The role of bivalent ions in the regulation of D-loop extension mediated by DMC1 during meiotic recombination.
Veronika Altmannova, Mario Spirek, Lucija Orlic, Atis Jēkabsons, Tereza Clarence, Raphaël A G Chaleil

iScience· November 2022

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Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment.
Marc F Lensink, Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphael A G Chaleil

Proteins· December 2021

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A Guide for Protein-Protein Docking Using SwarmDock.
Iain H Moal, Raphael A G Chaleil, Mieczyslaw Torchala, Paul A Bates

Methods Mol Biol· March 2021

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Enhanced sampling of protein conformational states for dynamic cross-docking within the protein-protein docking server SwarmDock.
Mieczyslaw Torchala, Tereza Gerguri, Raphael A G Chaleil, Patrick Gordon, Francis Russell

Proteins· August 2020

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Butyrophilin-2A1 Directly Binds Germline-Encoded Regions of the Vγ9Vδ2 TCR and Is Essential for Phosphoantigen Sensing.
Mohindar M Karunakaran, Carrie R Willcox, Mahboob Salim, Daniel Paletta, Alina S Fichtner, Raphaël A G Chaleil

Immunity· March 2020

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Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.
Marc F Lensink, Guillaume Brysbaert, Nurul Nadzirin, Sameer Velankar, Raphaël A G Chaleil

Proteins· December 2019

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Flexible Protein-Protein Docking with SwarmDock.
Iain H Moal, Raphael A G Chaleil, Paul A Bates

Methods Mol Biol· February 2019

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The γδTCR combines innate immunity with adaptive immunity by utilizing spatially distinct regions for agonist selection and antigen responsiveness.
Daisy Melandri, Iva Zlatareva, Raphaël A G Chaleil, Robin J Dart, Andrew Chancellor

Nat Immunol· December 2018

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A machine learning approach for ranking clusters of docked protein-protein complexes by pairwise cluster comparison.
Erik Pfeiffenberger, Raphael A G Chaleil, Iain H Moal, Paul A Bates

Proteins· March 2017

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Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.
Marc F Lensink, Sameer Velankar, Andriy Kryshtafovych, Shen-You Huang, Dina Schneidman-Duhovny, Raphaël A G Chaleil

Proteins· September 2016

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Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.
Thom Vreven, Iain H Moal, Anna Vangone, Brian G Pierce, Panagiotis L Kastritis, Raphael Chaleil

J Mol Biol· September 2015

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A simple biophysical model emulates budding yeast chromosome condensation.
Tammy M K Cheng, Sebastian Heeger, Raphaël A G Chaleil, Nik Matthews, Aengus Stewart

Elife· April 2015

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A Markov-chain model description of binding funnels to enhance the ranking of docked solutions.
Mieczyslaw Torchala, Iain H Moal, Raphael A G Chaleil, Rudi Agius, Paul A Bates

Proteins· December 2013

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SwarmDock: a server for flexible protein-protein docking.
Mieczyslaw Torchala, Iain H Moal, Raphael A G Chaleil, Juan Fernandez-Recio, Paul A Bates

Bioinformatics· March 2013

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Implicit flexibility in protein docking: cross-docking and local refinement.
Marcin Król, Raphael A G Chaleil, Alexander L Tournier, Paul A Bates

Proteins· December 2007

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Modeling the effects of toxins in metabolic networks.
Alireza Tamaddoni-Nezhad, Raphael Chaleil, Antonis C Kakas, Michael Sternberg, Jeremy Nicholson

IEEE Eng Med Biol Mag· May 2007

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Evolution of enzymes in metabolism: a network perspective.
Rui Alves, Raphael A G Chaleil, Michael J E Sternberg

J Mol Biol· July 2002

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